24 Parents
| Identifier | Name | Description |
|---|---|---|
| GO:0006396 | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
| GO:0008152 | metabolic process | The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. |
| GO:0016070 | RNA metabolic process | The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. |
| GO:0006397 | mRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
| GO:0044237 | cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. |
| GO:0000398 | mRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. |
| GO:0006139 | nucleobase-containing compound metabolic process | Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. |
| GO:0071704 | organic substance metabolic process | The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon. |
| GO:0006807 | nitrogen compound metabolic process | The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium. |
| GO:0008380 | RNA splicing | The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. |
| GO:0006725 | cellular aromatic compound metabolic process | The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells. |
| GO:0044238 | primary metabolic process | The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism. |
| GO:0009987 | cellular process | Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. |
| GO:0008150 | biological_process | Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. |
| GO:0044260 | cellular macromolecule metabolic process | The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells. |
| GO:0090304 | nucleic acid metabolic process | Any cellular metabolic process involving nucleic acids. |
| GO:0043170 | macromolecule metabolic process | The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. |
| GO:0046483 | heterocycle metabolic process | The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). |
| GO:0034641 | cellular nitrogen compound metabolic process | The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells. |
| GO:1901360 | organic cyclic compound metabolic process | The chemical reactions and pathways involving organic cyclic compound. |
| GO:0010467 | gene expression | The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. |
| GO:0016071 | mRNA metabolic process | The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | Splicing of RNA via a series of two transesterification reactions with a bulged adenosine residue from the intron branch point as the initiating nucleophile. When the initial RNA for the splicing reaction is a single molecule (cis splicing), the excised intron is released in a lariat structure. |
| GO:0000375 | RNA splicing, via transesterification reactions | Splicing of RNA via a series of two transesterification reactions. |
29 Protein
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0030710.2 | Quercus robur | 98.1 | egn | (M=2) K12844 - U4/U6 small nuclear ribonucleoprotein PRP31 | validated | ||
| Qrob_P0038890.2 | Quercus robur | 0.0 | egn | (M=3) K11095 - U1 small nuclear ribonucleoprotein C | validated | ||
| Qrob_P0112970.2 | Quercus robur | 55.4 | egn | (M=3) K11095 - U1 small nuclear ribonucleoprotein C | validated | ||
| Qrob_P0143650.2 | Quercus robur | 9.1 | egn | (M=4) K12874 - intron-binding protein aquarius | validated | ||
| Qrob_P0145250.2 | Quercus robur | 100.0 | egn | (M=1) KOG0119//KOG0122//KOG0124//KOG0144//KOG0145//KOG0148//KOG0149//KOG0307//KOG1588//KOG1984 - Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]. // Translation initiation factor 3 subunit g (eIF-3g) [Translation ribosomal structure and biogenesis]. // Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]. // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]. // RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]. // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]. // Vesicle coat complex COPII subunit SEC31 [Intracellular trafficking secretion and vesicular transport]. // RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification]. // Vesicle coat complex COPII subunit SFB3 [Intracellular trafficking secretion and vesicular transport]. | validated | ||
| Qrob_P0159570.2 | Quercus robur | 13.9 | egn | (M=2) K12844 - U4/U6 small nuclear ribonucleoprotein PRP31 | validated | ||
| Qrob_P0181030.2 | Quercus robur | 12.0 | egn | (M=3) K11984 - U4/U6.U5 tri-snRNP-associated protein 1 | validated | ||
| Qrob_P0211590.2 | Quercus robur | 99.0 | egn | (M=2) K12843 - U4/U6 small nuclear ribonucleoprotein PRP3 | validated | ||
| Qrob_P0218910.2 | Quercus robur | 1.0 | egn | (M=4) K12874 - intron-binding protein aquarius | validated | ||
| Qrob_P0243110.2 | Quercus robur | 19.0 | egn | (M=2) K12843 - U4/U6 small nuclear ribonucleoprotein PRP3 | validated | ||
| Qrob_P0244150.2 | Quercus robur | 91.0 | egn | (M=1) K11094 - U2 small nuclear ribonucleoprotein B'' | validated | ||
| Qrob_P0261330.2 | Quercus robur | 10.2 | egn | (M=4) KOG2217 - U4/U6.U5 snRNP associated protein [RNA processing and modification]. | validated | ||
| Qrob_P0341370.2 | Quercus robur | 0.0 | egn | (M=1) KOG1802//KOG1806 - RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]. // DEAD box containing helicases [Replication recombination and repair]. | validated | ||
| Qrob_P0341490.2 | Quercus robur | 0.0 | egn | (M=1) KOG1802//KOG1803//KOG1806//KOG1807 - RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]. // DNA helicase [Replication recombination and repair]. // DEAD box containing helicases [Replication recombination and repair]. // Helicases [Replication recombination and repair]. | validated | ||
| Qrob_P0348940.2 | Quercus robur | 69.2 | egn | (M=2) PTHR10501:SF0 - SMALL NUCLEAR RIBONUCLEOPROTEIN | validated | ||
| Qrob_P0362810.2 | Quercus robur | 100.0 | egn | (M=1) KOG0119//KOG0307//KOG0566//KOG1984 - Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]. // Vesicle coat complex COPII subunit SEC31 [Intracellular trafficking secretion and vesicular transport]. // Inositol-1 4 5-triphosphate 5-phosphatase (synaptojanin) INP51/INP52/INP53 family [Intracellular trafficking secretion and vesicular transport]. // Vesicle coat complex COPII subunit SFB3 [Intracellular trafficking secretion and vesicular transport]. | validated | ||
| Qrob_P0371160.2 | Quercus robur | 100.0 | egn | (M=1) PTHR12794 - GEMIN2 | validated | ||
| Qrob_P0379960.2 | Quercus robur | 0.0 | egn | (M=3) K06063 - SNW domain-containing protein 1 | validated | ||
| Qrob_P0380030.2 | Quercus robur | 0.0 | egn | (M=3) K06063 - SNW domain-containing protein 1 | validated | ||
| Qrob_P0446550.2 | Quercus robur | 35.2 | egn | (M=2) K12855 - pre-mRNA-processing factor 6 | validated | ||
| Qrob_P0511570.2 | Quercus robur | 23.3 | egn | (M=4) K12874 - intron-binding protein aquarius | validated | ||
| Qrob_P0562770.2 | Quercus robur | 100.0 | egn | (M=1) K12856 - pre-mRNA-processing factor 8 | validated | ||
| Qrob_P0565190.2 | Quercus robur | 0.0 | egn | (M=2) K12855 - pre-mRNA-processing factor 6 | validated | ||
| Qrob_P0612730.2 | Quercus robur | 10.1 | egn | (M=1) KOG0117//KOG0119//KOG0122//KOG0123//KOG0124//KOG0127//KOG0144//KOG0145//KOG0148//KOG1588 - Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]. // Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]. // Translation initiation factor 3 subunit g (eIF-3g) [Translation ribosomal structure and biogenesis]. // Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]. // Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]. // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]. // RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]. // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification]. | validated | ||
| Qrob_P0685100.2 | Quercus robur | 97.0 | egn | (M=2) PTHR10501:SF0 - SMALL NUCLEAR RIBONUCLEOPROTEIN | validated | ||
| Qrob_P0702350.2 | Quercus robur | 94.3 | egn | (M=3) K11984 - U4/U6.U5 tri-snRNP-associated protein 1 | validated | ||
| Qrob_P0706880.2 | Quercus robur | 100.0 | egn | (M=3) K06063 - SNW domain-containing protein 1 | validated | ||
| Qrob_P0742610.2 | Quercus robur | 100.0 | egn | (M=1) KOG0147//KOG0151//KOG0334//KOG0415//KOG0670//KOG1874//KOG1999//KOG2217//KOG2888//KOG4676 - Transcriptional coactivator CAPER (RRM superfamily) [Transcription]. // Predicted splicing regulator contains RRM SWAP and RPR domains [General function prediction only]. // RNA helicase [RNA processing and modification]. // Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification protein turnover chaperones]. // U4/U6-associated splicing factor PRP4 [RNA processing and modification]. // KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4 [Transcription]. // RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]. // U4/U6.U5 snRNP associated protein [RNA processing and modification]. // Putative RNA binding protein [General function prediction only]. // Splicing factor arginine/serine-rich [RNA processing and modification]. | validated | ||
| Qrob_P0743120.2 | Quercus robur | 100.0 | egn | (M=1) PTHR10548//PTHR10548:SF83 - SPLICING FACTOR, ARGININE/SERINE-RICH // SUBFAMILY NOT NAMED | validated |
55 Relations
| Relationship |
Parent Term . Identifier |
Child Term . Identifier |
|---|---|---|
| part of | GO:0000398 | GO:0000244 |
| part of | GO:0000398 | GO:0000245 |
| part of | GO:0000398 | GO:0000348 |
| part of | GO:0000398 | GO:0000349 |
| part of | GO:0000398 | GO:0000350 |
| part of | GO:0000398 | GO:0000352 |
| part of | GO:0000398 | GO:0000353 |
| part of | GO:0000398 | GO:0000354 |
| is_a | GO:0000398 | GO:0000365 |
| is_a | GO:0000398 | GO:0000366 |
| is_a | GO:0000398 | GO:0000380 |
| regulates | GO:0000398 | GO:0000381 |
| part of | GO:0000398 | GO:0000387 |
| part of | GO:0000398 | GO:0000388 |
| part of | GO:0000398 | GO:0000389 |
| part of | GO:0000398 | GO:0000390 |
| part of | GO:0000398 | GO:0000393 |
| part of | GO:0000398 | GO:0000395 |
| is_a | GO:0000377 | GO:0000398 |
| is_a | GO:0006397 | GO:0000398 |
| is_a | GO:0006807 | GO:0000398 |
| is_a | GO:0008152 | GO:0000398 |
| is_a | GO:1901360 | GO:0000398 |
| is_a | GO:0008150 | GO:0000398 |
| is_a | GO:0000375 | GO:0000398 |
| is_a | GO:0009987 | GO:0000398 |
| is_a | GO:0006396 | GO:0000398 |
| part of | GO:0071704 | GO:0000398 |
| is_a | GO:0008380 | GO:0000398 |
| is_a | GO:0006139 | GO:0000398 |
9 Synonyms
| Name | Type |
|---|---|
| mRNA splicing | synonym |
| nuclear mRNA splicing via U2-type spliceosome | synonym |
| nuclear mRNA splicing via U12-type spliceosome | synonym |
| pre-mRNA splicing | synonym |
| nuclear mRNA splicing, via spliceosome | synonym |
| splicing GT-AG intron | synonym |
| splicing AT-AC intron | synonym |
| GO:0006375 | alt_id |
| GO:0006374 | alt_id |
