Protein : Qrob_P0341370.2 Q. robur
Protein Identifier  ? Qrob_P0341370.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG1802//KOG1806 - RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]. // DEAD box containing helicases [Replication recombination and repair]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 201  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005681 spliceosomal complex Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000166mg 1 200 + 200 Gaps:30 14.71 1550 56.58 1e-66 hypothetical protein
blastp_kegg lcl|pmum:103330612 1 200 + 200 Gaps:31 14.77 1550 55.90 2e-65 intron-binding protein aquarius
blastp_kegg lcl|mdm:103446490 1 200 + 200 Gaps:26 14.05 1523 58.41 9e-64 intron-binding protein aquarius
blastp_kegg lcl|pxb:103929024 1 199 + 199 Gaps:20 13.99 1523 58.22 9e-63 intron-binding protein aquarius-like
blastp_kegg lcl|pxb:103957662 1 199 + 199 Gaps:30 13.99 1523 58.69 1e-62 intron-binding protein aquarius-like
blastp_kegg lcl|cit:102622876 1 200 + 200 Gaps:26 14.66 1542 53.10 2e-60 intron-binding protein aquarius-like
blastp_kegg lcl|cic:CICLE_v10030496mg 1 200 + 200 Gaps:26 14.66 1542 53.10 2e-60 hypothetical protein
blastp_kegg lcl|fve:101303350 1 200 + 200 Gaps:13 9.62 2151 55.07 6e-59 intron-binding protein aquarius-like
blastp_kegg lcl|tcc:TCM_025242 1 189 + 189 Gaps:31 14.17 1539 55.96 9e-59 Aquarius
blastp_kegg lcl|vvi:100260373 1 200 + 200 Gaps:46 13.53 1552 54.76 6e-58 intron-binding protein aquarius-like
blastp_uniprot_sprot sp|O60306|AQR_HUMAN 1 152 + 152 Gaps:2 10.10 1485 43.33 3e-27 Intron-binding protein aquarius OS Homo sapiens GN AQR PE 1 SV 4
blastp_uniprot_sprot sp|Q8CFQ3|AQR_MOUSE 1 124 + 124 Gaps:4 8.10 1481 50.83 3e-27 Intron-binding protein aquarius OS Mus musculus GN Aqr PE 2 SV 2
rpsblast_cdd gnl|CDD|205268 7 55 + 49 Gaps:3 26.67 195 40.38 7e-09 pfam13087 AAA_12 AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.
rpsblast_kog gnl|CDD|37017 1 110 + 110 Gaps:6 8.79 1320 57.76 5e-33 KOG1806 KOG1806 KOG1806 DEAD box containing helicases [Replication recombination and repair].
rpsblast_kog gnl|CDD|37013 6 53 + 48 Gaps:3 5.45 935 43.14 6e-07 KOG1802 KOG1802 KOG1802 RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 6 57 52 PF13087 none AAA domain none
PANTHER 6 110 105 PTHR10887:SF5 none none IPR026300
PANTHER 6 110 105 PTHR10887 none none none

0 Localization

0 Qtllist

0 Targeting