Protein : Qrob_P0244150.2 Q. robur
Protein Identifier  ? Qrob_P0244150.2 Organism . Name  Quercus robur
Score  91.0 Score Type  egn
Protein Description  (M=1) K11094 - U2 small nuclear ribonucleoprotein B'' Gene Prediction Quality  validated
Protein length 

Sequence

Length: 229  
Kegg Orthology  K11094
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO:0017069 snRNA binding Interacting selectively and non-covalently with a small nuclear RNA (snRNA).

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103945622 24 228 + 205 Gaps:3 89.66 232 76.92 3e-114 U2 small nuclear ribonucleoprotein B''-like
blastp_kegg lcl|sot:102577560 24 228 + 205 Gaps:1 89.18 231 76.21 3e-114 U2B spliceosomal protein
blastp_kegg lcl|pxb:103958935 24 228 + 205 Gaps:3 89.66 232 76.92 5e-114 U2 small nuclear ribonucleoprotein B''-like
blastp_kegg lcl|mdm:103422654 24 228 + 205 Gaps:3 89.66 232 76.92 7e-114 U2 small nuclear ribonucleoprotein B''-like
blastp_kegg lcl|sot:102600261 24 228 + 205 Gaps:2 89.22 232 75.85 1e-113 U2 small nuclear ribonucleoprotein B''-like
blastp_kegg lcl|cic:CICLE_v10002361mg 24 228 + 205 Gaps:6 89.61 231 80.68 2e-113 hypothetical protein
blastp_kegg lcl|mdm:103412782 24 228 + 205 Gaps:3 89.66 232 76.44 3e-113 U2 small nuclear ribonucleoprotein B''-like
blastp_kegg lcl|cit:102621915 24 228 + 205 Gaps:6 89.61 231 80.19 3e-113 U2 small nuclear ribonucleoprotein B'' 2-like
blastp_kegg lcl|cmo:103497024 24 228 + 205 Gaps:4 89.61 231 81.16 7e-113 U2 small nuclear ribonucleoprotein B'' 2-like
blastp_kegg lcl|csv:101207648 24 228 + 205 Gaps:4 89.61 231 81.64 9e-113 U2 small nuclear ribonucleoprotein B'' 2-like
blastp_pdb 3pgw_P 24 228 + 205 Gaps:6 65.25 282 54.35 4e-32 mol:protein length:282 U1-A
blastp_pdb 3pgw_A 24 228 + 205 Gaps:6 65.25 282 54.35 4e-32 mol:protein length:282 U1-A
blastp_pdb 1fht_A 25 118 + 94 Gaps:2 79.31 116 57.61 4e-32 mol:protein length:116 U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A
blastp_pdb 1a9n_D 25 98 + 74 none 77.08 96 67.57 8e-31 mol:protein length:96 SPLICEOSOMAL U2B''
blastp_pdb 1a9n_B 25 98 + 74 none 77.08 96 67.57 8e-31 mol:protein length:96 SPLICEOSOMAL U2B''
blastp_pdb 2k3k_A 28 106 + 79 none 75.96 104 62.03 8e-30 mol:protein length:104 U1 small nuclear ribonucleoprotein A
blastp_pdb 1dz5_B 25 100 + 76 none 75.25 101 60.53 2e-29 mol:protein length:101 U1A
blastp_pdb 1dz5_A 25 100 + 76 none 75.25 101 60.53 2e-29 mol:protein length:101 U1A
blastp_pdb 1aud_A 25 100 + 76 none 75.25 101 60.53 2e-29 mol:protein length:101 U1A 102
blastp_pdb 2oj3_A 25 99 + 75 none 75.00 100 61.33 4e-29 mol:protein length:100 U1 small nuclear ribonucleoprotein A
blastp_uniprot_sprot sp|O22922|RU2B1_ARATH 18 228 + 211 Gaps:13 92.24 232 70.56 1e-103 U2 small nuclear ribonucleoprotein B'' OS Arabidopsis thaliana GN U2B'' PE 1 SV 1
blastp_uniprot_sprot sp|Q8H1S6|RU2B2_ARATH 24 228 + 205 Gaps:6 89.52 229 75.12 3e-103 U2 small nuclear ribonucleoprotein B'' 2 OS Arabidopsis thaliana GN At1g06960 PE 1 SV 1
blastp_uniprot_sprot sp|B8AM21|RU2B_ORYSI 24 228 + 205 Gaps:5 89.66 232 71.15 2e-96 U2 small nuclear ribonucleoprotein B'' OS Oryza sativa subsp. indica GN OsI_11177 PE 3 SV 1
blastp_uniprot_sprot sp|Q10MR0|RU2B_ORYSJ 24 228 + 205 Gaps:5 89.66 232 70.67 5e-96 U2 small nuclear ribonucleoprotein B'' OS Oryza sativa subsp. japonica GN Os03g0298800 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DKM4|RU1A_ORYSJ 24 228 + 205 Gaps:11 85.38 253 54.17 1e-73 U1 small nuclear ribonucleoprotein A OS Oryza sativa subsp. japonica GN Os05g0154800 PE 3 SV 1
blastp_uniprot_sprot sp|A2Y0J7|RU1A_ORYSI 24 228 + 205 Gaps:11 85.38 253 54.17 1e-73 U1 small nuclear ribonucleoprotein A OS Oryza sativa subsp. indica GN OsI_18512 PE 3 SV 1
blastp_uniprot_sprot sp|Q39244|RU1A_ARATH 24 228 + 205 Gaps:15 87.20 250 55.50 1e-67 U1 small nuclear ribonucleoprotein A OS Arabidopsis thaliana GN U1A PE 1 SV 1
blastp_uniprot_sprot sp|P08579|RU2B_HUMAN 24 228 + 205 Gaps:7 90.67 225 53.43 2e-64 U2 small nuclear ribonucleoprotein B'' OS Homo sapiens GN SNRPB2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9CQI7|RU2B_MOUSE 24 228 + 205 Gaps:17 90.67 225 52.45 9e-64 U2 small nuclear ribonucleoprotein B'' OS Mus musculus GN Snrpb2 PE 2 SV 1
blastp_uniprot_sprot sp|P43332|SNRPA_DROME 28 228 + 201 Gaps:10 88.43 216 53.40 1e-60 U1 small nuclear ribonucleoprotein A OS Drosophila melanogaster GN snf PE 1 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 26 88 63 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Gene3D 144 227 84 G3DSA:3.30.70.330 none none IPR012677
PANTHER 25 228 204 PTHR10501 none none IPR024888
Gene3D 25 91 67 G3DSA:3.30.70.330 none none IPR012677
SUPERFAMILY 28 98 71 SSF54928 none none none
SUPERFAMILY 151 216 66 SSF54928 none none none
SMART 155 224 70 SM00360 none RNA recognition motif IPR000504
SMART 19 84 66 SM00360 none RNA recognition motif IPR000504
Pfam 29 86 58 PF13893 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) none
ProSiteProfiles 154 228 75 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Coils 100 123 24 Coil none none none
Pfam 156 215 60 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2

0 Targeting