Protein : Qrob_P0181030.2 Q. robur
Protein Identifier  ? Qrob_P0181030.2 Organism . Name  Quercus robur
Score  12.0 Score Type  egn
Protein Description  (M=3) K11984 - U4/U6.U5 tri-snRNP-associated protein 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 546  
Kegg Orthology  K11984
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103324194 17 527 + 511 Gaps:34 71.15 766 70.28 0.0 U4/U6.U5 tri-snRNP-associated protein 1
blastp_kegg lcl|pper:PRUPE_ppa000914mg 17 527 + 511 Gaps:34 56.59 963 70.83 0.0 hypothetical protein
blastp_kegg lcl|vvi:100266959 6 527 + 522 Gaps:19 57.32 902 70.41 0.0 uncharacterized LOC100266959
blastp_kegg lcl|mdm:103453126 6 527 + 522 Gaps:36 58.77 946 70.32 0.0 U4/U6.U5 tri-snRNP-associated protein 1-like
blastp_kegg lcl|pop:POPTR_0001s11550g 6 527 + 522 Gaps:15 60.67 862 71.70 0.0 POPTRDRAFT_640254 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0800560 6 527 + 522 Gaps:17 59.45 873 71.68 0.0 hypothetical protein
blastp_kegg lcl|mdm:103425697 6 527 + 522 Gaps:36 79.32 701 67.99 0.0 U4/U6.U5 tri-snRNP-associated protein 1-like
blastp_kegg lcl|pxb:103959226 6 527 + 522 Gaps:37 58.69 949 70.02 0.0 U4/U6.U5 tri-snRNP-associated protein 1
blastp_kegg lcl|cit:102613242 6 527 + 522 Gaps:20 59.00 878 69.50 0.0 U4/U6.U5 tri-snRNP-associated protein 1-like
blastp_kegg lcl|pvu:PHAVU_011G184800g 6 527 + 522 Gaps:21 81.95 626 69.59 0.0 hypothetical protein
blastp_uniprot_sprot sp|Q9Z315|SNUT1_MOUSE 17 211 + 195 Gaps:30 25.19 806 28.57 7e-07 U4/U6.U5 tri-snRNP-associated protein 1 OS Mus musculus GN Sart1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5XIW8|SNUT1_RAT 17 211 + 195 Gaps:30 25.19 806 28.57 7e-07 U4/U6.U5 tri-snRNP-associated protein 1 OS Rattus norvegicus GN Sart1 PE 2 SV 1
rpsblast_cdd gnl|CDD|202600 20 512 + 493 Gaps:84 79.10 603 33.96 3e-50 pfam03343 SART-1 SART-1 family. SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells.
rpsblast_kog gnl|CDD|37428 4 516 + 513 Gaps:24 71.63 705 29.11 4e-55 KOG2217 KOG2217 KOG2217 U4/U6.U5 snRNP associated protein [RNA processing and modification].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 8 510 503 PF03343 none SART-1 family IPR005011
PANTHER 7 516 510 PTHR14152 none none none
Coils 248 283 36 Coil none none none

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting