Protein : Qrob_P0511570.2 Q. robur
Protein Identifier  ? Qrob_P0511570.2 Organism . Name  Quercus robur
Score  23.3 Score Type  egn
Protein Description  (M=4) K12874 - intron-binding protein aquarius Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1404  
Kegg Orthology  K12874
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005681 spliceosomal complex Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000166mg 17 1403 + 1387 Gaps:39 91.10 1550 85.06 0.0 hypothetical protein
blastp_kegg lcl|pmum:103330612 17 1403 + 1387 Gaps:43 91.10 1550 84.84 0.0 intron-binding protein aquarius
blastp_kegg lcl|vvi:100260373 17 1403 + 1387 Gaps:36 89.88 1552 85.52 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|vvi:100243162 17 1403 + 1387 Gaps:42 91.43 1552 84.36 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|cic:CICLE_v10030496mg 17 1401 + 1385 Gaps:27 91.44 1542 83.83 0.0 hypothetical protein
blastp_kegg lcl|cmo:103489488 17 1400 + 1384 Gaps:22 89.54 1568 84.26 0.0 intron-binding protein aquarius
blastp_kegg lcl|cit:102622876 17 1401 + 1385 Gaps:27 91.44 1542 83.76 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|pxb:103929024 15 1401 + 1387 Gaps:47 91.40 1523 85.06 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|mdm:103446490 15 1403 + 1389 Gaps:43 91.53 1523 84.86 0.0 intron-binding protein aquarius
blastp_kegg lcl|pxb:103957662 15 1401 + 1387 Gaps:47 91.40 1523 84.99 0.0 intron-binding protein aquarius-like
blastp_pdb 2wjy_A 957 1248 + 292 Gaps:26 35.00 800 33.93 4e-26 mol:protein length:800 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2wjv_B 957 1248 + 292 Gaps:26 35.00 800 33.93 4e-26 mol:protein length:800 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2wjv_A 957 1248 + 292 Gaps:26 35.00 800 33.93 4e-26 mol:protein length:800 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2gk7_A 957 1248 + 292 Gaps:26 44.87 624 33.93 5e-26 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2gk6_B 957 1248 + 292 Gaps:26 44.87 624 33.93 5e-26 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2gk6_A 957 1248 + 292 Gaps:26 44.87 624 33.93 5e-26 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2gjk_A 957 1248 + 292 Gaps:26 44.87 624 33.93 5e-26 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2xzp_A 957 1248 + 292 Gaps:26 44.94 623 33.93 5e-26 mol:protein length:623 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2xzo_A 957 1248 + 292 Gaps:26 44.94 623 33.93 5e-26 mol:protein length:623 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2xzl_A 937 1249 + 313 Gaps:28 38.03 802 29.51 5e-20 mol:protein length:802 ATP-DEPENDENT HELICASE NAM7
blastp_uniprot_sprot sp|O60306|AQR_HUMAN 17 1313 + 1297 Gaps:57 85.39 1485 53.63 0.0 Intron-binding protein aquarius OS Homo sapiens GN AQR PE 1 SV 4
blastp_uniprot_sprot sp|Q8CFQ3|AQR_MOUSE 17 1313 + 1297 Gaps:65 85.89 1481 53.38 0.0 Intron-binding protein aquarius OS Mus musculus GN Aqr PE 2 SV 2
blastp_uniprot_sprot sp|O94508|CWF11_SCHPO 196 1305 + 1110 Gaps:135 81.39 1284 28.23 6e-75 Pre-mRNA-splicing factor cwf11 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cwf11 PE 1 SV 1
blastp_uniprot_sprot sp|Q8R151|ZNFX1_MOUSE 975 1249 + 275 Gaps:29 13.41 1909 38.28 2e-30 NFX1-type zinc finger-containing protein 1 OS Mus musculus GN Znfx1 PE 2 SV 3
blastp_uniprot_sprot sp|Q9P2E3|ZNFX1_HUMAN 973 1249 + 277 Gaps:29 13.45 1918 36.43 1e-28 NFX1-type zinc finger-containing protein 1 OS Homo sapiens GN ZNFX1 PE 1 SV 2
blastp_uniprot_sprot sp|Q92900|RENT1_HUMAN 957 1248 + 292 Gaps:26 24.80 1129 34.64 2e-25 Regulator of nonsense transcripts 1 OS Homo sapiens GN UPF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9EPU0|RENT1_MOUSE 957 1248 + 292 Gaps:26 24.91 1124 34.64 2e-25 Regulator of nonsense transcripts 1 OS Mus musculus GN Upf1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FJR0|RENT1_ARATH 957 1269 + 313 Gaps:30 23.68 1254 30.98 1e-24 Regulator of nonsense transcripts 1 homolog OS Arabidopsis thaliana GN UPF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q92355|SEN1_SCHPO 754 1248 + 495 Gaps:87 28.45 1687 31.04 1e-22 Helicase sen1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN sen1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9HEH1|RENT1_NEUCR 946 1257 + 312 Gaps:40 28.18 1093 32.14 3e-22 Regulator of nonsense transcripts 1 homolog OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN 2E4.130 PE 3 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 727 1398 672 PTHR10887 none none none
PANTHER 183 711 529 PTHR10887 none none none
Gene3D 732 867 136 G3DSA:3.40.50.300 none none IPR027417
Gene3D 1000 1097 98 G3DSA:3.40.50.300 none none IPR027417
Pfam 1060 1251 192 PF13087 none AAA domain none
Pfam 754 1051 298 PF13086 none AAA domain none
SUPERFAMILY 743 818 76 SSF52540 none none IPR027417
SUPERFAMILY 946 1314 369 SSF52540 none none IPR027417
PIRSF 10 1401 1392 PIRSF038901 none none IPR026300
Gene3D 1142 1261 120 G3DSA:3.40.50.300 none none IPR027417
PANTHER 727 1398 672 PTHR10887:SF5 none none IPR026300
PANTHER 183 711 529 PTHR10887:SF5 none none IPR026300
PANTHER 17 165 149 PTHR10887:SF5 none none IPR026300
PANTHER 17 165 149 PTHR10887 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4

0 Targeting