Protein : Qrob_P0446550.2 Q. robur
Protein Identifier  ? Qrob_P0446550.2 Organism . Name  Quercus robur
Score  35.2 Score Type  egn
Protein Description  (M=2) K12855 - pre-mRNA-processing factor 6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1035  
Kegg Orthology  K12855
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_008068 1 1034 + 1034 Gaps:17 100.00 1033 89.06 0.0 Pre-mRNA splicing factor-related
blastp_kegg lcl|pxb:103948507 1 1034 + 1034 Gaps:20 100.00 1026 87.52 0.0 protein STABILIZED1-like
blastp_kegg lcl|pper:PRUPE_ppa000712mg 1 1034 + 1034 Gaps:20 100.00 1026 88.11 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_005G104900g 1 1034 + 1034 Gaps:33 100.00 1041 86.84 0.0 hypothetical protein
blastp_kegg lcl|pxb:103934621 1 1034 + 1034 Gaps:36 100.00 998 88.48 0.0 protein STABILIZED1-like
blastp_kegg lcl|pmum:103328547 1 1034 + 1034 Gaps:20 100.00 1026 87.62 0.0 pre-mRNA-processing factor 6
blastp_kegg lcl|mdm:103405680 1 1034 + 1034 Gaps:20 100.00 1026 87.52 0.0 pre-mRNA-processing factor 6-like
blastp_kegg lcl|cmo:103498810 1 1034 + 1034 Gaps:15 100.00 1023 88.76 0.0 pre-mRNA-processing factor 6
blastp_kegg lcl|csv:101228644 1 1034 + 1034 Gaps:15 100.00 1023 88.66 0.0 pre-mRNA-processing factor 6-like
blastp_kegg lcl|csv:101211412 1 1034 + 1034 Gaps:15 100.00 1023 88.66 0.0 pre-mRNA-processing factor 6-like
blastp_uniprot_sprot sp|Q91YR7|PRP6_MOUSE 100 1015 + 916 Gaps:31 98.72 941 58.02 0.0 Pre-mRNA-processing factor 6 OS Mus musculus GN Prpf6 PE 2 SV 1
blastp_uniprot_sprot sp|A1A5S1|PRP6_RAT 100 1015 + 916 Gaps:31 98.72 941 57.91 0.0 Pre-mRNA-processing factor 6 OS Rattus norvegicus GN Prpf6 PE 2 SV 1
blastp_uniprot_sprot sp|O94906|PRP6_HUMAN 100 1016 + 917 Gaps:31 98.83 941 57.74 0.0 Pre-mRNA-processing factor 6 OS Homo sapiens GN PRPF6 PE 1 SV 1
blastp_uniprot_sprot sp|Q5RCC2|PRP6_PONAB 100 1016 + 917 Gaps:31 98.83 941 57.20 0.0 Pre-mRNA-processing factor 6 OS Pongo abelii GN PRPF6 PE 2 SV 1
blastp_uniprot_sprot sp|Q2KJJ0|PRP6_BOVIN 100 1015 + 916 Gaps:33 98.72 941 57.91 0.0 Pre-mRNA-processing factor 6 OS Bos taurus GN PRPF6 PE 2 SV 1
blastp_uniprot_sprot sp|Q12381|PRP1_SCHPO 105 1015 + 911 Gaps:24 98.57 906 46.58 0.0 Pre-mRNA-splicing factor prp1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp1 PE 1 SV 1
blastp_uniprot_sprot sp|P19735|PRP6_YEAST 106 1019 + 914 Gaps:135 99.11 899 30.86 1e-99 Pre-mRNA-splicing factor 6 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PRP6 PE 1 SV 1
blastp_uniprot_sprot sp|Q54XP4|CRNL1_DICDI 432 997 + 566 Gaps:92 70.92 705 30.60 1e-14 Crooked neck-like protein 1 OS Dictyostelium discoideum GN crnkl1 PE 3 SV 1
blastp_uniprot_sprot sp|Q527H0|CLF1_MAGO7 443 957 + 515 Gaps:153 69.61 691 34.72 1e-13 Pre-mRNA-splicing factor CLF1 OS Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN CLF1 PE 3 SV 1
blastp_uniprot_sprot sp|Q7SGD2|CLF1_NEUCR 372 992 + 621 Gaps:225 73.53 695 40.51 2e-13 Pre-mRNA-splicing factor clf-1 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN clf-1 PE 3 SV 1
rpsblast_cdd gnl|CDD|203444 111 273 + 163 Gaps:32 100.00 131 61.07 8e-49 pfam06424 PRP1_N PRP1 splicing factor N-terminal. This domain is specific to the N-terminal part of the prp1 splicing factor which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.
rpsblast_cdd gnl|CDD|188258 375 1033 + 659 Gaps:142 68.52 899 33.60 1e-11 TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction possibly for the regulation of PEP-CTERM protein expression since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
rpsblast_cdd gnl|CDD|34394 664 889 + 226 Gaps:3 33.06 484 35.00 3e-07 COG4783 COG4783 Putative Zn-dependent protease contains TPR repeats [General function prediction only].
rpsblast_kog gnl|CDD|35716 92 1022 + 931 Gaps:22 99.78 913 63.45 0.0 KOG0495 KOG0495 KOG0495 HAT repeat protein [RNA processing and modification].
rpsblast_kog gnl|CDD|37126 366 1002 + 637 Gaps:198 76.07 677 40.58 9e-16 KOG1915 KOG1915 KOG1915 Cell cycle control protein (crooked neck) [Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|37258 695 984 + 290 Gaps:98 39.52 835 22.42 3e-11 KOG2047 KOG2047 KOG2047 mRNA splicing factor [RNA processing and modification].
rpsblast_kog gnl|CDD|36288 403 879 + 477 Gaps:51 17.31 1710 34.12 1e-08 KOG1070 KOG1070 KOG1070 rRNA processing protein Rrp5 [RNA processing and modification].
rpsblast_kog gnl|CDD|39364 641 906 + 266 Gaps:13 32.92 799 23.57 3e-07 KOG4162 KOG4162 KOG4162 Predicted calmodulin-binding protein [Signal transduction mechanisms].
rpsblast_kog gnl|CDD|37607 815 905 + 91 Gaps:1 16.20 568 25.00 4e-07 KOG2396 KOG2396 KOG2396 HAT (Half-A-TPR) repeat-containing protein [General function prediction only].

33 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 350 1018 669 PTHR11246:SF1 none none IPR027108
Gene3D 374 565 192 G3DSA:1.25.40.10 none none IPR011990
Gene3D 763 1014 252 G3DSA:1.25.40.10 none none IPR011990
SUPERFAMILY 588 795 208 SSF48452 none none none
SUPERFAMILY 510 606 97 SSF48452 none none none
Pfam 111 272 162 PF06424 none PRP1 splicing factor, N-terminal IPR010491
PANTHER 102 308 207 PTHR11246:SF1 none none IPR027108
SUPERFAMILY 372 576 205 SSF48452 none none none
SMART 926 959 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 760 793 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 794 827 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 394 427 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 828 861 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 774 806 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 408 440 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 499 531 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 940 972 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 842 874 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 639 671 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 441 470 30 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 532 561 30 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 741 772 32 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 808 840 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 374 406 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 876 908 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 707 739 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SUPERFAMILY 795 998 204 SSF48452 none none none
Pfam 795 826 32 PF07719 none Tetratricopeptide repeat IPR013105
ProSiteProfiles 760 895 136 PS50293 none TPR repeat region circular profile. IPR013026
PANTHER 102 308 207 PTHR11246 none none none

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting