Protein : Qrob_P0706880.2 Q. robur
Protein Identifier  ? Qrob_P0706880.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K06063 - SNW domain-containing protein 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 607  
Kegg Orthology  K06063
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005681 spliceosomal complex Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101211333 1 605 + 605 Gaps:5 99.83 605 84.60 0.0 SNW domain-containing protein 1-like
blastp_kegg lcl|pper:PRUPE_ppa003079mg 1 606 + 606 Gaps:2 100.00 606 86.96 0.0 hypothetical protein
blastp_kegg lcl|pmum:103333167 1 606 + 606 Gaps:2 100.00 606 86.96 0.0 SNW/SKI-interacting protein-like
blastp_kegg lcl|cmo:103498019 1 606 + 606 Gaps:5 100.00 605 83.80 0.0 SNW/SKI-interacting protein-like
blastp_kegg lcl|cmo:103492552 1 605 + 605 Gaps:3 99.83 603 84.22 0.0 SNW/SKI-interacting protein-like
blastp_kegg lcl|pop:POPTR_0018s09310g 1 606 + 606 Gaps:4 100.00 610 84.75 0.0 POPTRDRAFT_578522 chromatin family protein
blastp_kegg lcl|vvi:100245841 1 606 + 606 Gaps:4 100.00 602 85.05 0.0 SNW domain-containing protein 1-like
blastp_kegg lcl|cic:CICLE_v10011323mg 3 606 + 604 Gaps:7 99.83 606 84.30 0.0 hypothetical protein
blastp_kegg lcl|cit:102606884 3 606 + 604 Gaps:7 99.83 606 84.30 0.0 SNW/SKI-interacting protein-like
blastp_kegg lcl|csv:101230971 1 605 + 605 Gaps:3 99.83 603 84.22 0.0 puff-specific protein Bx42-like
blastp_uniprot_sprot sp|O80653|SKIP_ARATH 1 604 + 604 Gaps:13 99.35 613 74.71 0.0 SNW/SKI-interacting protein OS Arabidopsis thaliana GN SKIP PE 1 SV 1
blastp_uniprot_sprot sp|Q5R7R9|SNW1_PONAB 48 565 + 518 Gaps:63 87.50 536 55.86 8e-154 SNW domain-containing protein 1 OS Pongo abelii GN SNW1 PE 2 SV 1
blastp_uniprot_sprot sp|Q1JQE0|SNW1_BOVIN 48 565 + 518 Gaps:63 87.50 536 55.86 1e-153 SNW domain-containing protein 1 OS Bos taurus GN SNW1 PE 2 SV 1
blastp_uniprot_sprot sp|Q13573|SNW1_HUMAN 48 565 + 518 Gaps:63 87.50 536 55.65 2e-153 SNW domain-containing protein 1 OS Homo sapiens GN SNW1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9CSN1|SNW1_MOUSE 48 565 + 518 Gaps:63 87.50 536 55.44 4e-152 SNW domain-containing protein 1 OS Mus musculus GN Snw1 PE 1 SV 3
blastp_uniprot_sprot sp|P39736|BX42_DROME 47 568 + 522 Gaps:52 88.85 547 53.29 9e-141 Puff-specific protein Bx42 OS Drosophila melanogaster GN Bx42 PE 1 SV 1
blastp_uniprot_sprot sp|Q4WEH7|PRP45_ASPFU 41 600 + 560 Gaps:52 91.54 579 46.60 5e-119 Pre-mRNA-processing protein 45 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN prp45 PE 3 SV 1
blastp_uniprot_sprot sp|Q22836|YGH1_CAEEL 4 567 + 564 Gaps:57 95.89 535 45.61 6e-115 Uncharacterized protein T27F2.1 OS Caenorhabditis elegans GN T27F2.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5AU50|PRP45_EMENI 41 600 + 560 Gaps:36 91.60 583 44.94 3e-114 Pre-mRNA-processing protein 45 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN prp45 PE 3 SV 1
blastp_uniprot_sprot sp|Q09882|PRP45_SCHPO 47 567 + 521 Gaps:21 92.28 557 45.53 2e-111 Pre-mRNA-processing protein 45 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp45 PE 1 SV 1
rpsblast_cdd gnl|CDD|190402 186 346 + 161 Gaps:3 100.00 158 67.72 4e-68 pfam02731 SKIP_SNW SKIP/SNW domain. This domain is found in chromatin proteins.
rpsblast_kog gnl|CDD|37652 3 568 + 566 Gaps:63 99.80 506 60.79 1e-146 KOG2441 KOG2441 KOG2441 mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification Chromatin structure and dynamics].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 392 418 27 Coil none none none
PANTHER 1 590 590 PTHR12096 none none IPR017862
Coils 316 346 31 Coil none none none
Pfam 187 346 160 PF02731 none SKIP/SNW domain IPR004015
Coils 145 166 22 Coil none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting