Protein : Qrob_P0143650.2 Q. robur
Protein Identifier  ? Qrob_P0143650.2 Organism . Name  Quercus robur
Score  9.1 Score Type  egn
Protein Description  (M=4) K12874 - intron-binding protein aquarius Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1060  
Kegg Orthology  K12874
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005681 spliceosomal complex Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103489488 19 1051 + 1033 Gaps:193 77.93 1568 71.36 0.0 intron-binding protein aquarius
blastp_kegg lcl|rcu:RCOM_1453220 19 1057 + 1039 Gaps:159 79.62 1492 72.73 0.0 hypothetical protein
blastp_kegg lcl|obr:102707850 19 1050 + 1032 Gaps:156 83.74 1402 69.59 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|sbi:SORBI_01g033760 19 1050 + 1032 Gaps:212 75.74 1632 65.13 0.0 SORBIDRAFT_01g033760 Sb01g033760 hypothetical protein
blastp_kegg lcl|zma:103635888 19 1050 + 1032 Gaps:195 73.92 1649 65.87 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|sita:101784848 19 1050 + 1032 Gaps:195 77.74 1568 65.87 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|bdi:100828122 19 1050 + 1032 Gaps:197 77.51 1565 65.70 0.0 AQR aquarius homolog (mouse)
blastp_kegg lcl|pmum:103330612 19 1051 + 1033 Gaps:133 76.71 1550 75.69 0.0 intron-binding protein aquarius
blastp_kegg lcl|pper:PRUPE_ppa000166mg 19 1051 + 1033 Gaps:131 76.71 1550 75.86 0.0 hypothetical protein
blastp_kegg lcl|vvi:100260373 19 1048 + 1030 Gaps:137 77.96 1552 75.29 0.0 intron-binding protein aquarius-like
blastp_pdb 2wjy_A 709 994 + 286 Gaps:28 34.25 800 34.67 4e-23 mol:protein length:800 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2wjv_B 709 994 + 286 Gaps:28 34.25 800 34.67 4e-23 mol:protein length:800 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2wjv_A 709 994 + 286 Gaps:28 34.25 800 34.67 4e-23 mol:protein length:800 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2xzp_A 695 994 + 300 Gaps:30 46.55 623 34.14 6e-23 mol:protein length:623 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2xzo_A 695 994 + 300 Gaps:30 46.55 623 34.14 6e-23 mol:protein length:623 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2gk7_A 695 994 + 300 Gaps:30 46.47 624 34.14 6e-23 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2gk6_B 695 994 + 300 Gaps:30 46.47 624 34.14 6e-23 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2gk6_A 695 994 + 300 Gaps:30 46.47 624 34.14 6e-23 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2gjk_A 695 994 + 300 Gaps:30 46.47 624 34.14 6e-23 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2xzl_A 689 1014 + 326 Gaps:32 39.15 802 30.25 1e-17 mol:protein length:802 ATP-DEPENDENT HELICASE NAM7
blastp_uniprot_sprot sp|O60306|AQR_HUMAN 19 1053 + 1035 Gaps:182 80.67 1485 44.91 0.0 Intron-binding protein aquarius OS Homo sapiens GN AQR PE 1 SV 4
blastp_uniprot_sprot sp|Q8CFQ3|AQR_MOUSE 19 1053 + 1035 Gaps:186 81.16 1481 44.51 0.0 Intron-binding protein aquarius OS Mus musculus GN Aqr PE 2 SV 2
blastp_uniprot_sprot sp|O94508|CWF11_SCHPO 388 976 + 589 Gaps:61 45.33 1284 29.04 5e-52 Pre-mRNA-splicing factor cwf11 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cwf11 PE 1 SV 1
blastp_uniprot_sprot sp|Q8R151|ZNFX1_MOUSE 727 1041 + 315 Gaps:41 16.13 1909 34.42 4e-28 NFX1-type zinc finger-containing protein 1 OS Mus musculus GN Znfx1 PE 2 SV 3
blastp_uniprot_sprot sp|Q9P2E3|ZNFX1_HUMAN 658 994 + 337 Gaps:51 15.75 1918 34.77 5e-26 NFX1-type zinc finger-containing protein 1 OS Homo sapiens GN ZNFX1 PE 1 SV 2
blastp_uniprot_sprot sp|Q92355|SEN1_SCHPO 528 994 + 467 Gaps:107 28.10 1687 31.22 2e-23 Helicase sen1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN sen1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9EPU0|RENT1_MOUSE 695 994 + 300 Gaps:30 25.80 1124 34.83 3e-22 Regulator of nonsense transcripts 1 OS Mus musculus GN Upf1 PE 1 SV 2
blastp_uniprot_sprot sp|Q92900|RENT1_HUMAN 695 994 + 300 Gaps:30 25.69 1129 34.83 3e-22 Regulator of nonsense transcripts 1 OS Homo sapiens GN UPF1 PE 1 SV 2
blastp_uniprot_sprot sp|P34243|HCS1_YEAST 527 993 + 467 Gaps:112 62.81 683 29.84 5e-22 DNA polymerase alpha-associated DNA helicase A OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN HCS1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FJR0|RENT1_ARATH 696 994 + 299 Gaps:40 24.16 1254 31.02 4e-21 Regulator of nonsense transcripts 1 homolog OS Arabidopsis thaliana GN UPF1 PE 1 SV 2

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 517 592 76 SSF52540 none none IPR027417
SUPERFAMILY 678 1045 368 SSF52540 none none IPR027417
Pfam 812 994 183 PF13087 none AAA domain none
PANTHER 19 994 976 PTHR10887:SF5 none none IPR026300
Gene3D 506 641 136 G3DSA:3.40.50.300 none none IPR027417
Gene3D 752 849 98 G3DSA:3.40.50.300 none none IPR027417
PANTHER 19 994 976 PTHR10887 none none none
Pfam 528 803 276 PF13086 none AAA domain none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting