Protein : Qrob_P0243110.2 Q. robur
Protein Identifier  ? Qrob_P0243110.2 Organism . Name  Quercus robur
Score  19.0 Score Type  egn
Protein Description  (M=2) K12843 - U4/U6 small nuclear ribonucleoprotein PRP3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 281  
Kegg Orthology  K12843
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO:0046540 U4/U6 x U5 tri-snRNP complex A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100248403 43 280 + 238 Gaps:28 45.09 581 66.41 5e-84 U4/U6 small nuclear ribonucleoprotein Prp3-like
blastp_kegg lcl|gmx:100802774 43 280 + 238 Gaps:29 34.46 801 63.41 1e-83 U4/U6 small nuclear ribonucleoprotein Prp3-like
blastp_kegg lcl|pvu:PHAVU_007G008300g 43 280 + 238 Gaps:31 35.04 819 63.07 7e-83 hypothetical protein
blastp_kegg lcl|gmx:100812519 43 280 + 238 Gaps:29 29.85 881 65.78 2e-82 U4/U6 small nuclear ribonucleoprotein Prp3-like
blastp_kegg lcl|atr:s00019p00169230 43 280 + 238 Gaps:29 32.67 805 65.02 2e-82 AMTR_s00019p00169230 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_002G037600g 91 280 + 190 Gaps:4 21.94 866 73.68 3e-82 hypothetical protein
blastp_kegg lcl|gmx:100797535 91 280 + 190 Gaps:4 22.84 832 73.68 3e-82 U4/U6 small nuclear ribonucleoprotein Prp3-like
blastp_kegg lcl|pda:103710186 91 280 + 190 Gaps:2 21.63 869 71.28 1e-81 U4/U6 small nuclear ribonucleoprotein Prp3-like
blastp_kegg lcl|pda:103712035 91 280 + 190 Gaps:2 19.28 975 71.81 7e-81 U4/U6 small nuclear ribonucleoprotein Prp3-like
blastp_kegg lcl|pop:POPTR_1385s002001 97 280 + 184 Gaps:2 85.05 214 68.68 8e-80 hypothetical protein
blastp_uniprot_sprot sp|O43395|PRPF3_HUMAN 91 279 + 189 Gaps:23 28.11 683 39.58 6e-27 U4/U6 small nuclear ribonucleoprotein Prp3 OS Homo sapiens GN PRPF3 PE 1 SV 2
blastp_uniprot_sprot sp|Q5R5F1|PRPF3_PONAB 91 279 + 189 Gaps:23 28.11 683 39.58 6e-27 U4/U6 small nuclear ribonucleoprotein Prp3 OS Pongo abelii GN PRPF3 PE 2 SV 1
blastp_uniprot_sprot sp|Q2KIA6|PRPF3_BOVIN 91 279 + 189 Gaps:23 28.11 683 39.58 6e-27 U4/U6 small nuclear ribonucleoprotein Prp3 OS Bos taurus GN PRPF3 PE 2 SV 1
blastp_uniprot_sprot sp|Q922U1|PRPF3_MOUSE 91 279 + 189 Gaps:23 28.11 683 39.58 1e-26 U4/U6 small nuclear ribonucleoprotein Prp3 OS Mus musculus GN Prpf3 PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZJ85|PRPF3_CHICK 91 279 + 189 Gaps:23 28.07 684 38.54 7e-26 U4/U6 small nuclear ribonucleoprotein Prp3 OS Gallus gallus GN PRPF3 PE 2 SV 1
blastp_uniprot_sprot sp|Q09856|PRP3_SCHPO 103 279 + 177 Gaps:14 34.13 542 33.51 2e-14 U4/U5/U6 small nuclear ribonucleoprotein prp3 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp3 PE 1 SV 1
blastp_uniprot_sprot sp|Q03338|PRP3_YEAST 94 241 + 148 Gaps:5 31.34 469 29.93 1e-07 U4/U6 small nuclear ribonucleoprotein PRP3 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PRP3 PE 1 SV 1
rpsblast_cdd gnl|CDD|149574 89 158 + 70 Gaps:2 30.63 222 52.94 7e-19 pfam08572 PRP3 pre-mRNA processing factor 3 (PRP3). Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor. The human PRP3 has been implicated in autosomal retinitis pigmentosa.
rpsblast_cdd gnl|CDD|148258 181 280 + 100 Gaps:2 80.31 127 35.29 5e-17 pfam06544 DUF1115 Protein of unknown function (DUF1115). This family represents the C-terminus of hypothetical eukaryotic proteins of unknown function.
rpsblast_kog gnl|CDD|37980 91 280 + 190 Gaps:6 36.02 522 46.28 5e-46 KOG2769 KOG2769 KOG2769 Putative u4/u6 small nuclear ribonucleoprotein [RNA processing and modification].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 91 158 68 PF08572 none pre-mRNA processing factor 3 (PRP3) IPR013881
Phobius 7 26 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 27 280 254 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 91 280 190 PTHR14212 none none IPR027104
Pfam 180 279 100 PF06544 none Protein of unknown function (DUF1115) IPR010541
Phobius 1 6 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

3 Localization

Analysis Start End Length
TMHMM 7 26 19
SignalP_GRAM_POSITIVE 1 27 26
SignalP_EUK 1 27 26

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 27   Secretory pathway 1 0.964 0.049 NON-PLANT 27