Protein : Qrob_P0211590.2 Q. robur
Protein Identifier  ? Qrob_P0211590.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=2) K12843 - U4/U6 small nuclear ribonucleoprotein PRP3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 663  
Kegg Orthology  K12843
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO:0046540 U4/U6 x U5 tri-snRNP complex A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103332565 4 661 + 658 Gaps:8 74.80 885 77.79 0.0 U4/U6 small nuclear ribonucleoprotein Prp3
blastp_kegg lcl|pper:PRUPE_ppa001191mg 4 661 + 658 Gaps:8 74.80 885 77.64 0.0 hypothetical protein
blastp_kegg lcl|csv:101219411 5 661 + 657 Gaps:12 70.96 923 79.24 0.0 U4/U6 small nuclear ribonucleoprotein Prp3-like
blastp_kegg lcl|cic:CICLE_v10030694mg 6 660 + 655 Gaps:27 74.41 852 79.97 0.0 hypothetical protein
blastp_kegg lcl|cit:102614658 6 660 + 655 Gaps:27 76.76 826 79.97 0.0 U4/U6 small nuclear ribonucleoprotein Prp3-like
blastp_kegg lcl|pop:POPTR_0010s22020g 8 661 + 654 Gaps:18 75.80 847 76.32 0.0 POPTRDRAFT_886640 hypothetical protein
blastp_kegg lcl|gmx:100802774 23 661 + 639 Gaps:14 80.02 801 76.44 0.0 U4/U6 small nuclear ribonucleoprotein Prp3-like
blastp_kegg lcl|pvu:PHAVU_002G037600g 5 661 + 657 Gaps:26 74.48 866 75.50 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_043010 23 661 + 639 Gaps:32 82.55 762 79.01 0.0 Pre-mRNA-splicing factor 3 isoform 1
blastp_kegg lcl|cmo:103500170 5 661 + 657 Gaps:12 70.96 923 79.08 0.0 U4/U6 small nuclear ribonucleoprotein Prp3
blastp_uniprot_sprot sp|Q5ZJ85|PRPF3_CHICK 150 656 + 507 Gaps:58 73.83 684 37.43 1e-75 U4/U6 small nuclear ribonucleoprotein Prp3 OS Gallus gallus GN PRPF3 PE 2 SV 1
blastp_uniprot_sprot sp|O43395|PRPF3_HUMAN 177 656 + 480 Gaps:50 69.69 683 37.61 4e-75 U4/U6 small nuclear ribonucleoprotein Prp3 OS Homo sapiens GN PRPF3 PE 1 SV 2
blastp_uniprot_sprot sp|Q5R5F1|PRPF3_PONAB 177 656 + 480 Gaps:50 69.69 683 37.61 5e-75 U4/U6 small nuclear ribonucleoprotein Prp3 OS Pongo abelii GN PRPF3 PE 2 SV 1
blastp_uniprot_sprot sp|Q922U1|PRPF3_MOUSE 177 656 + 480 Gaps:50 69.69 683 37.82 5e-75 U4/U6 small nuclear ribonucleoprotein Prp3 OS Mus musculus GN Prpf3 PE 2 SV 1
blastp_uniprot_sprot sp|Q2KIA6|PRPF3_BOVIN 185 656 + 472 Gaps:42 67.35 683 38.04 8e-75 U4/U6 small nuclear ribonucleoprotein Prp3 OS Bos taurus GN PRPF3 PE 2 SV 1
blastp_uniprot_sprot sp|Q09856|PRP3_SCHPO 269 660 + 392 Gaps:40 71.59 542 35.31 2e-49 U4/U5/U6 small nuclear ribonucleoprotein prp3 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp3 PE 1 SV 1
blastp_uniprot_sprot sp|Q03338|PRP3_YEAST 448 632 + 185 Gaps:5 39.66 469 30.65 5e-15 U4/U6 small nuclear ribonucleoprotein PRP3 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PRP3 PE 1 SV 1
rpsblast_cdd gnl|CDD|149574 277 506 + 230 Gaps:18 100.00 222 52.25 1e-67 pfam08572 PRP3 pre-mRNA processing factor 3 (PRP3). Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor. The human PRP3 has been implicated in autosomal retinitis pigmentosa.
rpsblast_cdd gnl|CDD|148258 529 655 + 127 none 100.00 127 42.52 2e-38 pfam06544 DUF1115 Protein of unknown function (DUF1115). This family represents the C-terminus of hypothetical eukaryotic proteins of unknown function.
rpsblast_kog gnl|CDD|37980 172 660 + 489 Gaps:63 82.38 522 48.60 1e-111 KOG2769 KOG2769 KOG2769 Putative u4/u6 small nuclear ribonucleoprotein [RNA processing and modification].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 155 657 503 PTHR14212 none none IPR027104
Coils 80 101 22 Coil none none none
Pfam 278 506 229 PF08572 none pre-mRNA processing factor 3 (PRP3) IPR013881
Coils 422 445 24 Coil none none none
Pfam 528 654 127 PF06544 none Protein of unknown function (DUF1115) IPR010541

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9

0 Targeting