Protein : Qrob_P0218910.2 Q. robur
Protein Identifier  ? Qrob_P0218910.2 Organism . Name  Quercus robur
Score  1.0 Score Type  egn
Protein Description  (M=4) K12874 - intron-binding protein aquarius Gene Prediction Quality  validated
Protein length 

Sequence

Length: 962  
Kegg Orthology  K12874
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005681 spliceosomal complex Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000166mg 17 961 + 945 Gaps:130 68.52 1550 74.67 0.0 hypothetical protein
blastp_kegg lcl|pmum:103330612 17 961 + 945 Gaps:143 68.58 1550 74.69 0.0 intron-binding protein aquarius
blastp_kegg lcl|vvi:100260373 17 961 + 945 Gaps:116 66.37 1552 76.02 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|vvi:100243162 17 958 + 942 Gaps:111 66.49 1552 75.48 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|cmo:103489488 17 961 + 945 Gaps:116 66.84 1568 74.24 0.0 intron-binding protein aquarius
blastp_kegg lcl|cit:102622876 17 961 + 945 Gaps:129 68.81 1542 73.61 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|tcc:TCM_025242 71 950 + 880 Gaps:128 65.37 1539 74.35 0.0 Aquarius
blastp_kegg lcl|cic:CICLE_v10030496mg 17 961 + 945 Gaps:129 68.81 1542 73.61 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0003s20020g 71 961 + 891 Gaps:125 65.38 1554 73.43 0.0 POPTRDRAFT_555007 hypothetical protein
blastp_kegg lcl|pxb:103929024 15 959 + 945 Gaps:137 68.61 1523 74.45 0.0 intron-binding protein aquarius-like
blastp_pdb 2wjy_A 538 820 + 283 Gaps:35 35.00 800 31.43 3e-19 mol:protein length:800 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2wjv_B 538 820 + 283 Gaps:35 35.00 800 31.43 3e-19 mol:protein length:800 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2wjv_A 538 820 + 283 Gaps:35 35.00 800 31.43 3e-19 mol:protein length:800 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2gk7_A 538 820 + 283 Gaps:35 44.87 624 31.43 4e-19 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2gk6_B 538 820 + 283 Gaps:35 44.87 624 31.43 4e-19 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2gk6_A 538 820 + 283 Gaps:35 44.87 624 31.43 4e-19 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2gjk_A 538 820 + 283 Gaps:35 44.87 624 31.43 4e-19 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2xzp_A 538 820 + 283 Gaps:35 44.94 623 31.43 5e-19 mol:protein length:623 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2xzo_A 538 820 + 283 Gaps:35 44.94 623 31.43 5e-19 mol:protein length:623 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2xzl_A 518 821 + 304 Gaps:35 38.03 802 28.20 1e-13 mol:protein length:802 ATP-DEPENDENT HELICASE NAM7
blastp_uniprot_sprot sp|O60306|AQR_HUMAN 71 929 + 859 Gaps:99 63.30 1485 50.53 0.0 Intron-binding protein aquarius OS Homo sapiens GN AQR PE 1 SV 4
blastp_uniprot_sprot sp|Q8CFQ3|AQR_MOUSE 71 885 + 815 Gaps:93 60.09 1481 51.80 0.0 Intron-binding protein aquarius OS Mus musculus GN Aqr PE 2 SV 2
blastp_uniprot_sprot sp|O94508|CWF11_SCHPO 195 877 + 683 Gaps:68 52.10 1284 30.19 2e-61 Pre-mRNA-splicing factor cwf11 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cwf11 PE 1 SV 1
blastp_uniprot_sprot sp|Q8R151|ZNFX1_MOUSE 554 821 + 268 Gaps:34 13.51 1909 34.88 3e-23 NFX1-type zinc finger-containing protein 1 OS Mus musculus GN Znfx1 PE 2 SV 3
blastp_uniprot_sprot sp|Q9P2E3|ZNFX1_HUMAN 554 821 + 268 Gaps:26 13.45 1918 33.33 4e-22 NFX1-type zinc finger-containing protein 1 OS Homo sapiens GN ZNFX1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FJR0|RENT1_ARATH 525 841 + 317 Gaps:53 26.00 1254 30.67 2e-19 Regulator of nonsense transcripts 1 homolog OS Arabidopsis thaliana GN UPF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9EPU0|RENT1_MOUSE 538 820 + 283 Gaps:35 24.91 1124 32.14 9e-19 Regulator of nonsense transcripts 1 OS Mus musculus GN Upf1 PE 1 SV 2
blastp_uniprot_sprot sp|Q92900|RENT1_HUMAN 524 820 + 297 Gaps:37 26.22 1129 31.76 1e-18 Regulator of nonsense transcripts 1 OS Homo sapiens GN UPF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9HEH1|RENT1_NEUCR 527 829 + 303 Gaps:43 28.18 1093 29.87 8e-17 Regulator of nonsense transcripts 1 homolog OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN 2E4.130 PE 3 SV 1
blastp_uniprot_sprot sp|Q92355|SEN1_SCHPO 335 820 + 486 Gaps:88 28.45 1687 28.96 9e-17 Helicase sen1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN sen1 PE 1 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 581 678 98 G3DSA:3.40.50.300 none none IPR027417
Gene3D 313 448 136 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 527 886 360 SSF52540 none none IPR027417
SUPERFAMILY 324 399 76 SSF52540 none none IPR027417
PANTHER 42 961 920 PTHR10887 none none none
Pfam 335 632 298 PF13086 none AAA domain none
PANTHER 42 961 920 PTHR10887:SF5 none none IPR026300
Pfam 641 824 184 PF13087 none AAA domain none

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting