Protein : Qrob_P0261330.2 Q. robur
Protein Identifier  ? Qrob_P0261330.2 Organism . Name  Quercus robur
Score  10.2 Score Type  egn
Protein Description  (M=4) KOG2217 - U4/U6.U5 snRNP associated protein [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 178  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103453126 4 177 + 174 Gaps:16 17.55 946 68.67 4e-61 U4/U6.U5 tri-snRNP-associated protein 1-like
blastp_kegg lcl|pxb:103959226 4 176 + 173 Gaps:16 17.39 949 67.88 5e-59 U4/U6.U5 tri-snRNP-associated protein 1
blastp_kegg lcl|mdm:103403924 1 176 + 176 Gaps:16 17.76 946 63.69 4e-55 U4/U6.U5 tri-snRNP-associated protein 1-like
blastp_kegg lcl|pper:PRUPE_ppa000914mg 13 177 + 165 Gaps:16 16.30 963 68.15 9e-51 hypothetical protein
blastp_kegg lcl|pmum:103324194 13 177 + 165 Gaps:16 20.50 766 66.88 5e-50 U4/U6.U5 tri-snRNP-associated protein 1
blastp_kegg lcl|fve:101304094 1 177 + 177 Gaps:20 17.74 930 67.88 2e-48 uncharacterized protein LOC101304094
blastp_kegg lcl|cic:CICLE_v10000233mg 1 177 + 177 Gaps:20 18.79 878 59.39 2e-46 hypothetical protein
blastp_kegg lcl|cit:102613242 1 177 + 177 Gaps:20 18.79 878 59.39 3e-46 U4/U6.U5 tri-snRNP-associated protein 1-like
blastp_kegg lcl|pop:POPTR_0001s11550g 1 177 + 177 Gaps:16 19.61 862 59.76 4e-43 POPTRDRAFT_640254 hypothetical protein
blastp_kegg lcl|vvi:100266959 5 177 + 173 Gaps:34 16.08 902 62.76 1e-42 uncharacterized LOC100266959
rpsblast_cdd gnl|CDD|202600 39 177 + 139 Gaps:34 21.06 603 35.43 5e-10 pfam03343 SART-1 SART-1 family. SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells.
rpsblast_kog gnl|CDD|37428 22 177 + 156 Gaps:11 20.57 705 29.66 2e-10 KOG2217 KOG2217 KOG2217 U4/U6.U5 snRNP associated protein [RNA processing and modification].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 36 57 22 Coil none none none
Pfam 6 176 171 PF03343 none SART-1 family IPR005011

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting