Protein : Qrob_P0159570.2 Q. robur
Protein Identifier  ? Qrob_P0159570.2 Organism . Name  Quercus robur
Score  13.9 Score Type  egn
Protein Description  (M=2) K12844 - U4/U6 small nuclear ribonucleoprotein PRP31 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 404  
Kegg Orthology  K12844
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0000244 spliceosomal tri-snRNP complex assembly The formation of a tri-snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. This includes reannealing of U4 and U6 (or U4atac and U6atac) snRNAs released from previous rounds of splicing to reform the U4/U6 snRNP (or U4atac/U6atac snRNP) as well as the subsequent association of the U5 snRNP with the U4/U6 snRNP (or U4atac/U6atac snRNP) to form a tri-snRNP that is ready to reassemble into another spliceosome complex.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO:0046540 U4/U6 x U5 tri-snRNP complex A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_010249 8 399 + 392 Gaps:32 85.77 485 50.96 2e-120 Pre-mRNA processing ribonucleoprotein binding region-containing protein isoform 1
blastp_kegg lcl|atr:s00009p00268610 8 389 + 382 Gaps:26 82.40 483 51.51 2e-120 AMTR_s00009p00268610 hypothetical protein
blastp_kegg lcl|pop:POPTR_0014s09840g 8 399 + 392 Gaps:31 85.57 485 51.08 4e-119 POPTRDRAFT_245102 hypothetical protein
blastp_kegg lcl|cam:101501981 8 399 + 392 Gaps:32 85.77 485 50.24 1e-118 U4/U6 small nuclear ribonucleoprotein Prp31-like
blastp_kegg lcl|cam:101506264 8 399 + 392 Gaps:32 85.77 485 50.48 1e-118 U4/U6 small nuclear ribonucleoprotein Prp31-like
blastp_kegg lcl|pop:POPTR_0002s17650g 8 399 + 392 Gaps:33 85.80 486 50.60 7e-118 POPTRDRAFT_552316 hypothetical protein
blastp_kegg lcl|vvi:100262218 8 399 + 392 Gaps:32 85.07 489 50.24 9e-118 U4/U6 small nuclear ribonucleoprotein Prp31-like
blastp_kegg lcl|mtr:MTR_7g037560 8 389 + 382 Gaps:25 91.10 438 49.87 1e-117 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_kegg lcl|mdm:103407169 8 399 + 392 Gaps:32 85.77 485 50.24 1e-117 U4/U6 small nuclear ribonucleoprotein Prp31-like
blastp_kegg lcl|mdm:103404000 8 399 + 392 Gaps:32 85.77 485 50.24 1e-117 U4/U6 small nuclear ribonucleoprotein Prp31-like
blastp_pdb 2ozb_E 62 315 + 254 Gaps:6 99.23 260 39.15 2e-47 mol:protein length:260 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 2ozb_B 62 315 + 254 Gaps:6 99.23 260 39.15 2e-47 mol:protein length:260 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3siv_K 68 315 + 248 Gaps:6 99.21 254 38.89 5e-47 mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3siv_H 68 315 + 248 Gaps:6 99.21 254 38.89 5e-47 mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3siv_E 68 315 + 248 Gaps:6 99.21 254 38.89 5e-47 mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3siv_B 68 315 + 248 Gaps:6 99.21 254 38.89 5e-47 mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3siu_E 68 315 + 248 Gaps:6 99.21 254 38.89 5e-47 mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3siu_B 68 315 + 248 Gaps:6 99.21 254 38.89 5e-47 mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3nvi_C 57 312 + 256 Gaps:23 69.39 379 27.00 4e-13 mol:protein length:379 NOP5/NOP56 related protein
blastp_pdb 3nvi_A 57 312 + 256 Gaps:23 69.39 379 27.00 4e-13 mol:protein length:379 NOP5/NOP56 related protein
blastp_uniprot_sprot sp|Q8CCF0|PRP31_MOUSE 47 389 + 343 Gaps:13 69.34 499 39.88 3e-62 U4/U6 small nuclear ribonucleoprotein Prp31 OS Mus musculus GN Prpf31 PE 2 SV 3
blastp_uniprot_sprot sp|Q5U5C5|PRP31_XENLA 71 389 + 319 Gaps:10 64.06 498 41.07 2e-61 U4/U6 small nuclear ribonucleoprotein Prp31 OS Xenopus laevis GN prpf31 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NVP6|PRP31_XENTR 71 389 + 319 Gaps:10 64.06 498 40.75 6e-60 U4/U6 small nuclear ribonucleoprotein Prp31 OS Xenopus tropicalis GN prpf31 PE 2 SV 1
blastp_uniprot_sprot sp|Q8WWY3|PRP31_HUMAN 47 389 + 343 Gaps:13 69.34 499 40.17 2e-59 U4/U6 small nuclear ribonucleoprotein Prp31 OS Homo sapiens GN PRPF31 PE 1 SV 2
blastp_uniprot_sprot sp|Q7SXM7|PRP31_DANRE 45 389 + 345 Gaps:19 68.50 508 38.79 1e-58 U4/U6 small nuclear ribonucleoprotein Prp31 OS Danio rerio GN prpf31 PE 2 SV 1
blastp_uniprot_sprot sp|O42904|PRP31_SCHPO 66 389 + 324 Gaps:5 61.97 518 34.58 2e-43 Pre-mRNA-processing factor 31 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp31 PE 3 SV 1
blastp_uniprot_sprot sp|P49704|PRP31_YEAST 83 398 + 316 Gaps:21 65.79 494 26.15 6e-23 Pre-mRNA-processing factor 31 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PRP31 PE 1 SV 2
blastp_uniprot_sprot sp|Q54MT2|NOP56_DICDI 85 343 + 259 Gaps:47 51.85 540 29.29 5e-21 Nucleolar protein 56 OS Dictyostelium discoideum GN nop56 PE 3 SV 1
blastp_uniprot_sprot sp|Q9P7S7|NOP58_SCHPO 58 295 + 238 Gaps:14 48.43 508 30.89 6e-20 Nucleolar protein 58 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN nop58 PE 1 SV 1
blastp_uniprot_sprot sp|Q4PBF2|NOP58_USTMA 58 288 + 231 Gaps:15 40.89 582 29.41 7e-19 Nucleolar protein 58 OS Ustilago maydis (strain 521 / FGSC 9021) GN NOP58 PE 3 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 172 315 144 PF01798 none Putative snoRNA binding domain IPR002687
SMART 78 130 53 SM00931 none NOSIC (NUC001) domain IPR012976
Pfam 321 389 69 PF09785 none Prp31 C terminal domain IPR019175
ProSiteProfiles 198 315 118 PS51358 none Nop domain profile. IPR002687
Pfam 80 130 51 PF08060 none NOSIC (NUC001) domain IPR012976
SUPERFAMILY 72 315 244 SSF89124 none none none
Coils 7 28 22 Coil none none none
PANTHER 49 387 339 PTHR13904 none none IPR027105

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting