Protein : Qrob_P0379960.2 Q. robur
Protein Identifier  ? Qrob_P0379960.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K06063 - SNW domain-containing protein 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 235  
Kegg Orthology  K06063
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005681 spliceosomal complex Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10011323mg 18 231 + 214 Gaps:32 39.27 606 61.34 5e-72 hypothetical protein
blastp_kegg lcl|cit:102606884 18 231 + 214 Gaps:32 39.27 606 61.34 5e-72 SNW/SKI-interacting protein-like
blastp_kegg lcl|aly:ARALYDRAFT_476882 18 234 + 217 Gaps:32 39.51 610 58.51 1e-70 hypothetical protein
blastp_kegg lcl|pda:103723728 18 234 + 217 Gaps:35 38.93 596 59.48 3e-70 SNW/SKI-interacting protein-like
blastp_kegg lcl|fve:101292337 18 234 + 217 Gaps:35 39.14 608 62.61 1e-69 SNW domain-containing protein 1-like
blastp_kegg lcl|pop:POPTR_0018s09310g 18 234 + 217 Gaps:34 39.18 610 59.83 3e-69 POPTRDRAFT_578522 chromatin family protein
blastp_kegg lcl|csv:101230971 18 234 + 217 Gaps:34 39.64 603 59.00 7e-69 puff-specific protein Bx42-like
blastp_kegg lcl|csv:101203346 18 234 + 217 Gaps:34 39.64 603 59.00 7e-69 puff-specific protein Bx42-like
blastp_kegg lcl|cmo:103492552 18 234 + 217 Gaps:34 39.64 603 58.58 8e-69 SNW/SKI-interacting protein-like
blastp_kegg lcl|brp:103832171 18 234 + 217 Gaps:32 39.51 610 57.68 1e-68 SNW/SKI-interacting protein
blastp_uniprot_sprot sp|O80653|SKIP_ARATH 18 234 + 217 Gaps:31 39.48 613 57.44 8e-69 SNW/SKI-interacting protein OS Arabidopsis thaliana GN SKIP PE 1 SV 1
blastp_uniprot_sprot sp|P39736|BX42_DROME 18 231 + 214 Gaps:30 37.66 547 45.63 5e-40 Puff-specific protein Bx42 OS Drosophila melanogaster GN Bx42 PE 1 SV 1
blastp_uniprot_sprot sp|Q4WEH7|PRP45_ASPFU 7 234 + 228 Gaps:27 40.24 579 41.63 1e-35 Pre-mRNA-processing protein 45 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN prp45 PE 3 SV 1
blastp_uniprot_sprot sp|Q5AU50|PRP45_EMENI 7 234 + 228 Gaps:26 40.14 583 39.74 3e-35 Pre-mRNA-processing protein 45 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN prp45 PE 3 SV 1
blastp_uniprot_sprot sp|Q13573|SNW1_HUMAN 18 232 + 215 Gaps:22 37.50 536 46.77 5e-35 SNW domain-containing protein 1 OS Homo sapiens GN SNW1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R7R9|SNW1_PONAB 18 232 + 215 Gaps:22 37.50 536 46.77 5e-35 SNW domain-containing protein 1 OS Pongo abelii GN SNW1 PE 2 SV 1
blastp_uniprot_sprot sp|Q1JQE0|SNW1_BOVIN 18 232 + 215 Gaps:22 37.50 536 46.77 7e-35 SNW domain-containing protein 1 OS Bos taurus GN SNW1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CSN1|SNW1_MOUSE 18 232 + 215 Gaps:22 37.50 536 46.27 1e-34 SNW domain-containing protein 1 OS Mus musculus GN Snw1 PE 1 SV 3
blastp_uniprot_sprot sp|Q22836|YGH1_CAEEL 18 231 + 214 Gaps:18 37.38 535 41.00 3e-27 Uncharacterized protein T27F2.1 OS Caenorhabditis elegans GN T27F2.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q09882|PRP45_SCHPO 18 99 + 82 none 14.72 557 54.88 2e-17 Pre-mRNA-processing protein 45 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp45 PE 1 SV 1
rpsblast_cdd gnl|CDD|190402 18 92 + 75 none 47.47 158 64.00 4e-25 pfam02731 SKIP_SNW SKIP/SNW domain. This domain is found in chromatin proteins.
rpsblast_kog gnl|CDD|37652 18 234 + 217 Gaps:16 39.72 506 51.74 5e-46 KOG2441 KOG2441 KOG2441 mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification Chromatin structure and dynamics].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 18 234 217 PTHR12096 none none IPR017862
Coils 67 95 29 Coil none none none
Pfam 18 92 75 PF02731 none SKIP/SNW domain IPR004015

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting