Protein : Qrob_P0145250.2 Q. robur
Protein Identifier  ? Qrob_P0145250.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0119//KOG0122//KOG0124//KOG0144//KOG0145//KOG0148//KOG0149//KOG0307//KOG1588//KOG1984 - Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]. // Translation initiation factor 3 subunit g (eIF-3g) [Translation ribosomal structure and biogenesis]. // Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]. // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]. // RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]. // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]. // Vesicle coat complex COPII subunit SEC31 [Intracellular trafficking secretion and vesicular transport]. // RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification]. // Vesicle coat complex COPII subunit SFB3 [Intracellular trafficking secretion and vesicular transport]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 813  
Kegg Orthology  K13095
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO:0045131 pre-mRNA branch point binding Interacting selectively and non-covalently with a pre-mRNA branch point sequence, located upstream of the 3' splice site.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101506285 14 812 + 799 Gaps:72 100.00 783 76.25 0.0 branchpoint-bridging protein-like
blastp_kegg lcl|pxb:103963381 1 812 + 812 Gaps:73 100.00 791 77.37 0.0 branchpoint-bridging protein-like
blastp_kegg lcl|cmo:103494479 75 812 + 738 Gaps:44 90.49 778 81.53 0.0 branchpoint-bridging protein
blastp_kegg lcl|csv:101205455 75 812 + 738 Gaps:44 90.60 777 81.82 0.0 uncharacterized LOC101205455
blastp_kegg lcl|pxb:103961934 14 812 + 799 Gaps:58 98.21 781 78.49 0.0 branchpoint-bridging protein-like
blastp_kegg lcl|pop:POPTR_0001s00850g 75 812 + 738 Gaps:43 88.88 809 81.22 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_011G006700g 65 812 + 748 Gaps:69 92.78 803 79.60 0.0 hypothetical protein
blastp_kegg lcl|mdm:103410265 14 812 + 799 Gaps:73 98.24 794 77.31 0.0 branchpoint-bridging protein-like
blastp_kegg lcl|pper:PRUPE_ppa001547mg 7 812 + 806 Gaps:55 97.14 804 79.51 0.0 hypothetical protein
blastp_kegg lcl|pxb:103959807 14 812 + 799 Gaps:58 98.21 781 78.49 0.0 branchpoint-bridging protein-like
blastp_pdb 2bl5_A 273 392 + 120 Gaps:6 90.00 140 48.41 2e-26 mol:protein length:140 MGC83862 PROTEIN
blastp_pdb 1k1g_A 273 394 + 122 Gaps:8 94.66 131 48.39 8e-26 mol:protein length:131 SF1-Bo isoform
blastp_pdb 3hi9_D 515 591 + 77 none 91.67 84 48.05 1e-14 mol:protein length:84 ELAV-like protein 1
blastp_pdb 3hi9_C 515 591 + 77 none 91.67 84 48.05 1e-14 mol:protein length:84 ELAV-like protein 1
blastp_pdb 3hi9_B 515 591 + 77 none 91.67 84 48.05 1e-14 mol:protein length:84 ELAV-like protein 1
blastp_pdb 3hi9_A 515 591 + 77 none 91.67 84 48.05 1e-14 mol:protein length:84 ELAV-like protein 1
blastp_pdb 1d8z_A 515 599 + 85 Gaps:1 94.38 89 44.05 3e-14 mol:protein length:89 HU ANTIGEN C
blastp_pdb 1fnx_H 447 596 + 150 Gaps:14 97.70 174 43.53 1e-13 mol:protein length:174 HU ANTIGEN C
blastp_pdb 2rne_A 516 595 + 80 none 69.57 115 42.50 1e-12 mol:protein length:115 Tia1 protein
blastp_pdb 2dgo_A 516 595 + 80 none 69.57 115 42.50 1e-12 mol:protein length:115 Cytotoxic granule-associated RNA binding prot
blastp_uniprot_sprot sp|P0CO44|BBP_CRYNJ 108 463 + 356 Gaps:37 64.65 546 43.91 3e-73 Branchpoint-bridging protein OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN BBP PE 3 SV 1
blastp_uniprot_sprot sp|P0CO45|BBP_CRYNB 108 463 + 356 Gaps:37 64.65 546 43.91 3e-73 Branchpoint-bridging protein OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN BBP PE 3 SV 1
blastp_uniprot_sprot sp|Q4WXV6|BBP_ASPFU 148 461 + 314 Gaps:49 58.13 566 43.47 4e-70 Branchpoint-bridging protein OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN bbp PE 3 SV 1
blastp_uniprot_sprot sp|Q8NIW7|BBP_NEUCR 131 459 + 329 Gaps:55 57.66 607 42.57 5e-70 Branchpoint-bridging protein OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN bbp-1 PE 3 SV 1
blastp_uniprot_sprot sp|O74555|BBP_SCHPO 114 458 + 345 Gaps:29 60.99 587 41.62 3e-69 Branchpoint-bridging protein OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN bpb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q4P0H7|BBP_USTMA 113 457 + 345 Gaps:45 55.68 625 42.24 6e-69 Branchpoint-bridging protein OS Ustilago maydis (strain 521 / FGSC 9021) GN BBP PE 3 SV 1
blastp_uniprot_sprot sp|Q54BM5|BBP_DICDI 152 460 + 309 Gaps:33 58.28 501 47.95 8e-65 Branchpoint-bridging protein OS Dictyostelium discoideum GN sf1 PE 3 SV 1
blastp_uniprot_sprot sp|Q15637|SF01_HUMAN 152 457 + 306 Gaps:34 47.89 639 42.16 8e-56 Splicing factor 1 OS Homo sapiens GN SF1 PE 1 SV 4
blastp_uniprot_sprot sp|Q6C187|BBP_YARLI 151 485 + 335 Gaps:28 55.37 605 40.90 1e-55 Branchpoint-bridging protein OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN BBP PE 3 SV 1
blastp_uniprot_sprot sp|Q64213|SF01_MOUSE 152 489 + 338 Gaps:52 54.52 653 39.61 2e-55 Splicing factor 1 OS Mus musculus GN Sf1 PE 1 SV 6

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 145 458 314 PTHR11208 none none none
Pfam 289 357 69 PF00013 none KH domain IPR004088
Gene3D 271 393 123 G3DSA:3.30.1370.10 none none IPR004088
Gene3D 395 436 42 G3DSA:4.10.60.10 none none IPR001878
PANTHER 92 118 27 PTHR11208:SF45 none none IPR031150
SMART 274 366 93 SM00322 none K homology RNA-binding domain IPR004087
PANTHER 92 118 27 PTHR11208 none none none
Gene3D 496 591 96 G3DSA:3.30.70.330 none none IPR012677
ProSiteProfiles 515 593 79 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
ProSiteProfiles 396 411 16 PS50158 none Zinc finger CCHC-type profile. IPR001878
PANTHER 503 775 273 PTHR11208:SF45 none none IPR031150
PANTHER 145 458 314 PTHR11208:SF45 none none IPR031150
PANTHER 503 775 273 PTHR11208 none none none
ProSiteProfiles 289 361 73 PS50084 none Type-1 KH domain profile. IPR004088
Pfam 517 586 70 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
SUPERFAMILY 392 438 47 SSF57756 none none IPR001878
SMART 516 589 74 SM00360 none RNA recognition motif IPR000504
SUPERFAMILY 508 603 96 SSF54928 none none none
SMART 395 411 17 SM00343 none zinc finger IPR001878
SMART 421 437 17 SM00343 none zinc finger IPR001878
SUPERFAMILY 274 400 127 SSF54791 none none IPR004088

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting