Protein : Qrob_P0030710.2 Q. robur
Protein Identifier  ? Qrob_P0030710.2 Organism . Name  Quercus robur
Score  98.1 Score Type  egn
Protein Description  (M=2) K12844 - U4/U6 small nuclear ribonucleoprotein PRP31 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 460  
Kegg Orthology  K12844
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0000244 spliceosomal tri-snRNP complex assembly The formation of a tri-snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. This includes reannealing of U4 and U6 (or U4atac and U6atac) snRNAs released from previous rounds of splicing to reform the U4/U6 snRNP (or U4atac/U6atac snRNP) as well as the subsequent association of the U5 snRNP with the U4/U6 snRNP (or U4atac/U6atac snRNP) to form a tri-snRNP that is ready to reassemble into another spliceosome complex.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO:0046540 U4/U6 x U5 tri-snRNP complex A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103336600 1 425 + 425 none 87.63 485 91.29 0.0 U4/U6 small nuclear ribonucleoprotein Prp31-like
blastp_kegg lcl|pper:PRUPE_ppa004930mg 1 425 + 425 none 87.63 485 91.29 0.0 hypothetical protein
blastp_kegg lcl|vvi:100262218 2 425 + 424 none 86.71 489 91.75 0.0 U4/U6 small nuclear ribonucleoprotein Prp31-like
blastp_kegg lcl|pmum:103337041 1 425 + 425 none 87.63 485 91.06 0.0 U4/U6 small nuclear ribonucleoprotein Prp31-like
blastp_kegg lcl|pxb:103952649 1 425 + 425 none 87.63 485 89.88 0.0 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_kegg lcl|tcc:TCM_010249 1 425 + 425 none 87.63 485 90.59 0.0 Pre-mRNA processing ribonucleoprotein binding region-containing protein isoform 1
blastp_kegg lcl|mdm:103407169 1 425 + 425 none 87.63 485 89.65 0.0 U4/U6 small nuclear ribonucleoprotein Prp31-like
blastp_kegg lcl|mdm:103404000 1 425 + 425 none 87.63 485 89.65 0.0 U4/U6 small nuclear ribonucleoprotein Prp31-like
blastp_kegg lcl|mdm:103448618 1 425 + 425 none 87.63 485 89.41 0.0 U4/U6 small nuclear ribonucleoprotein Prp31-like
blastp_kegg lcl|cic:CICLE_v10031363mg 1 425 + 425 Gaps:1 87.65 486 90.61 0.0 hypothetical protein
blastp_pdb 2ozb_E 88 335 + 248 Gaps:2 96.15 260 54.00 7e-85 mol:protein length:260 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 2ozb_B 88 335 + 248 Gaps:2 96.15 260 54.00 7e-85 mol:protein length:260 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3siv_K 89 335 + 247 Gaps:2 98.03 254 54.22 7e-85 mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3siv_H 89 335 + 247 Gaps:2 98.03 254 54.22 7e-85 mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3siv_E 89 335 + 247 Gaps:2 98.03 254 54.22 7e-85 mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3siv_B 89 335 + 247 Gaps:2 98.03 254 54.22 7e-85 mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3siu_E 89 335 + 247 Gaps:2 98.03 254 54.22 7e-85 mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3siu_B 89 335 + 247 Gaps:2 98.03 254 54.22 7e-85 mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31
blastp_pdb 3nvi_C 106 331 + 226 Gaps:16 58.05 379 32.73 3e-20 mol:protein length:379 NOP5/NOP56 related protein
blastp_pdb 3nvi_A 106 331 + 226 Gaps:16 58.05 379 32.73 3e-20 mol:protein length:379 NOP5/NOP56 related protein
blastp_uniprot_sprot sp|Q8CCF0|PRP31_MOUSE 47 410 + 364 Gaps:2 73.35 499 50.82 4e-115 U4/U6 small nuclear ribonucleoprotein Prp31 OS Mus musculus GN Prpf31 PE 2 SV 3
blastp_uniprot_sprot sp|Q5U5C5|PRP31_XENLA 21 410 + 390 Gaps:7 77.71 498 50.13 9e-115 U4/U6 small nuclear ribonucleoprotein Prp31 OS Xenopus laevis GN prpf31 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NVP6|PRP31_XENTR 21 410 + 390 Gaps:9 77.71 498 48.84 2e-111 U4/U6 small nuclear ribonucleoprotein Prp31 OS Xenopus tropicalis GN prpf31 PE 2 SV 1
blastp_uniprot_sprot sp|Q8WWY3|PRP31_HUMAN 47 410 + 364 Gaps:2 73.35 499 50.82 5e-111 U4/U6 small nuclear ribonucleoprotein Prp31 OS Homo sapiens GN PRPF31 PE 1 SV 2
blastp_uniprot_sprot sp|Q7SXM7|PRP31_DANRE 3 410 + 408 Gaps:10 82.28 508 46.89 8e-110 U4/U6 small nuclear ribonucleoprotein Prp31 OS Danio rerio GN prpf31 PE 2 SV 1
blastp_uniprot_sprot sp|O42904|PRP31_SCHPO 3 426 + 424 Gaps:33 86.68 518 38.98 7e-83 Pre-mRNA-processing factor 31 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp31 PE 3 SV 1
blastp_uniprot_sprot sp|P49704|PRP31_YEAST 107 430 + 324 Gaps:24 69.64 494 33.72 8e-47 Pre-mRNA-processing factor 31 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PRP31 PE 1 SV 2
blastp_uniprot_sprot sp|Q9P7S7|NOP58_SCHPO 81 347 + 267 Gaps:2 52.17 508 28.30 2e-27 Nucleolar protein 58 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN nop58 PE 1 SV 1
blastp_uniprot_sprot sp|Q4PBF2|NOP58_USTMA 96 309 + 214 none 36.77 582 28.50 2e-26 Nucleolar protein 58 OS Ustilago maydis (strain 521 / FGSC 9021) GN NOP58 PE 3 SV 1
blastp_uniprot_sprot sp|P0CP27|NOP58_CRYNB 78 309 + 232 none 41.06 565 28.02 2e-26 Nucleolar protein 58 OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN NOP58 PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 338 426 89 PF09785 none Prp31 C terminal domain IPR019175
SMART 96 148 53 SM00931 none NOSIC (NUC001) domain IPR012976
PANTHER 2 425 424 PTHR13904 none none IPR027105
Pfam 96 148 53 PF08060 none NOSIC (NUC001) domain IPR012976
Phobius 453 459 7 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 217 335 119 PS51358 none Nop domain profile. IPR002687
Phobius 1 429 429 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 430 452 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 89 335 247 SSF89124 none none none
Pfam 191 335 145 PF01798 none Putative snoRNA binding domain IPR002687

1 Localization

Analysis Start End Length
TMHMM 430 452 22

0 Qtllist

0 Targeting