Protein : Qrob_P0362810.2 Q. robur
Protein Identifier  ? Qrob_P0362810.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0119//KOG0307//KOG0566//KOG1984 - Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]. // Vesicle coat complex COPII subunit SEC31 [Intracellular trafficking secretion and vesicular transport]. // Inositol-1 4 5-triphosphate 5-phosphatase (synaptojanin) INP51/INP52/INP53 family [Intracellular trafficking secretion and vesicular transport]. // Vesicle coat complex COPII subunit SFB3 [Intracellular trafficking secretion and vesicular transport]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 801  
Kegg Orthology  K13095
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO:0045131 pre-mRNA branch point binding Interacting selectively and non-covalently with a pre-mRNA branch point sequence, located upstream of the 3' splice site.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100246694 4 794 + 791 Gaps:79 96.07 866 53.25 0.0 uncharacterized LOC100246694
blastp_kegg lcl|pmum:103325167 1 799 + 799 Gaps:118 98.77 815 52.67 0.0 splicing factor 1
blastp_kegg lcl|pxb:103964206 1 792 + 792 Gaps:182 98.34 724 55.48 0.0 splicing factor 1-like
blastp_kegg lcl|mdm:103452449 18 792 + 775 Gaps:186 98.30 705 54.98 5e-178 splicing factor 1
blastp_kegg lcl|tcc:TCM_040232 1 794 + 794 Gaps:141 96.22 872 48.03 3e-176 RNA-binding KH domain-containing protein putative isoform 1
blastp_kegg lcl|rcu:RCOM_1455570 1 793 + 793 Gaps:100 96.06 838 48.07 1e-170 protein binding protein putative
blastp_kegg lcl|pper:PRUPE_ppa001857mg 1 799 + 799 Gaps:95 98.67 754 51.34 2e-169 hypothetical protein
blastp_kegg lcl|cit:102625244 16 800 + 785 Gaps:169 96.80 781 50.40 3e-158 protein piccolo-like
blastp_kegg lcl|cic:CICLE_v10014343mg 16 800 + 785 Gaps:169 96.80 781 50.26 2e-157 hypothetical protein
blastp_kegg lcl|fve:101298403 18 797 + 780 Gaps:165 99.86 726 49.93 2e-156 uncharacterized protein LOC101298403
blastp_pdb 1k1g_A 147 222 + 76 Gaps:2 56.49 131 40.54 1e-07 mol:protein length:131 SF1-Bo isoform
blastp_pdb 2bl5_A 145 234 + 90 Gaps:6 68.57 140 37.50 1e-06 mol:protein length:140 MGC83862 PROTEIN
blastp_uniprot_sprot sp|O74555|BBP_SCHPO 45 233 + 189 Gaps:25 28.28 587 27.71 4e-10 Branchpoint-bridging protein OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN bpb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q54BM5|BBP_DICDI 98 229 + 132 Gaps:55 34.53 501 27.75 3e-08 Branchpoint-bridging protein OS Dictyostelium discoideum GN sf1 PE 3 SV 1
blastp_uniprot_sprot sp|Q4WXV6|BBP_ASPFU 145 233 + 89 Gaps:3 15.19 566 38.37 4e-08 Branchpoint-bridging protein OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN bbp PE 3 SV 1
blastp_uniprot_sprot sp|Q64213|SF01_MOUSE 133 271 + 139 Gaps:17 23.28 653 27.63 4e-08 Splicing factor 1 OS Mus musculus GN Sf1 PE 1 SV 6
blastp_uniprot_sprot sp|P0CO44|BBP_CRYNJ 145 233 + 89 Gaps:4 15.57 546 37.65 5e-08 Branchpoint-bridging protein OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN BBP PE 3 SV 1
blastp_uniprot_sprot sp|P0CO45|BBP_CRYNB 145 233 + 89 Gaps:4 15.57 546 37.65 5e-08 Branchpoint-bridging protein OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN BBP PE 3 SV 1
blastp_uniprot_sprot sp|Q15637|SF01_HUMAN 133 229 + 97 Gaps:6 15.49 639 33.33 1e-07 Splicing factor 1 OS Homo sapiens GN SF1 PE 1 SV 4
blastp_uniprot_sprot sp|Q8NIW7|BBP_NEUCR 145 233 + 89 Gaps:11 14.17 607 38.37 1e-07 Branchpoint-bridging protein OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN bbp-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q6P104|QKIB_DANRE 145 235 + 91 Gaps:6 30.41 319 37.11 2e-06 Protein quaking-B OS Danio rerio GN qkib PE 2 SV 1
blastp_uniprot_sprot sp|Q91XU1|QKI_RAT 145 234 + 90 Gaps:6 28.15 341 37.50 2e-06 Protein quaking OS Rattus norvegicus GN Qki PE 1 SV 2
rpsblast_cdd gnl|CDD|29005 145 230 + 86 Gaps:5 72.50 120 41.38 3e-12 cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins transcription factors and post-transcriptional modifiers of mRNA..
rpsblast_cdd gnl|CDD|165506 316 775 + 460 Gaps:50 13.01 3151 21.46 6e-12 PHA03247 PHA03247 large tegument protein UL36 Provisional.
rpsblast_kog gnl|CDD|35341 41 485 + 445 Gaps:60 87.91 554 22.38 2e-14 KOG0119 KOG0119 KOG0119 Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification].
rpsblast_kog gnl|CDD|35528 454 737 + 284 Gaps:13 26.22 1049 23.64 2e-08 KOG0307 KOG0307 KOG0307 Vesicle coat complex COPII subunit SEC31 [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|35786 423 618 + 196 Gaps:26 18.89 1080 17.16 2e-07 KOG0566 KOG0566 KOG0566 Inositol-1 4 5-triphosphate 5-phosphatase (synaptojanin) INP51/INP52/INP53 family [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|37195 468 730 + 263 Gaps:22 27.11 1007 21.25 3e-07 KOG1984 KOG1984 KOG1984 Vesicle coat complex COPII subunit SFB3 [Intracellular trafficking secretion and vesicular transport].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 145 232 88 PTHR11208:SF45 none none IPR031150
SUPERFAMILY 144 235 92 SSF54791 none none IPR004088
Pfam 154 222 69 PF00013 none KH domain IPR004088
SMART 126 230 105 SM00322 none K homology RNA-binding domain IPR004087
ProSiteProfiles 152 225 74 PS50084 none Type-1 KH domain profile. IPR004088
PANTHER 145 232 88 PTHR11208 none none none
Gene3D 145 232 88 G3DSA:3.30.1370.10 none none IPR004088

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting