Blast Analysis : gnl|CDD|29005

Analysis  rpsblast_cdd Start  145
End  230 Strand  +
Length  86 Note  Gaps:5
Hit Coverage  72.50 Hit Length  120
Hit Pident  41.38 E Val  3e-12
Hit Description  cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins transcription factors and post-transcriptional modifiers of mRNA.. Hit Pcons  14.94
Name  Qrob_P0362810.2
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1 Protein

Protein Identifier
Organism . Name 		Score Score Type Protein Description Alias (in v1) Code Enzyme Gene Prediction Quality
Qrob_P0362810.2 Quercus robur 100.0 egn (M=1) KOG0119//KOG0307//KOG0566//KOG1984 - Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]. // Vesicle coat complex COPII subunit SEC31 [Intracellular trafficking secretion and vesicular transport]. // Inositol-1 4 5-triphosphate 5-phosphatase (synaptojanin) INP51/INP52/INP53 family [Intracellular trafficking secretion and vesicular transport]. // Vesicle coat complex COPII subunit SFB3 [Intracellular trafficking secretion and vesicular transport].     validated