Protein : Qrob_P0341490.2 Q. robur
Protein Identifier  ? Qrob_P0341490.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG1802//KOG1803//KOG1806//KOG1807 - RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]. // DNA helicase [Replication recombination and repair]. // DEAD box containing helicases [Replication recombination and repair]. // Helicases [Replication recombination and repair]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 539  
Kegg Orthology  K12874
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005681 spliceosomal complex Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10030496mg 15 537 + 523 Gaps:81 39.69 1542 70.92 0.0 hypothetical protein
blastp_kegg lcl|cit:102622876 15 537 + 523 Gaps:81 39.69 1542 70.75 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|cmo:103489488 15 530 + 516 Gaps:77 37.31 1568 72.14 0.0 intron-binding protein aquarius
blastp_kegg lcl|vvi:100260373 15 537 + 523 Gaps:79 38.27 1552 72.56 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|vvi:100243162 15 537 + 523 Gaps:79 38.27 1552 72.22 0.0 intron-binding protein aquarius-like
blastp_kegg lcl|pper:PRUPE_ppa000166mg 15 537 + 523 Gaps:78 38.26 1550 72.18 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0003s20020g 15 525 + 511 Gaps:77 37.32 1554 71.90 0.0 POPTRDRAFT_555007 hypothetical protein
blastp_kegg lcl|pmum:103330612 15 537 + 523 Gaps:80 38.26 1550 72.18 0.0 intron-binding protein aquarius
blastp_kegg lcl|mdm:103446490 15 525 + 511 Gaps:73 37.82 1523 72.22 0.0 intron-binding protein aquarius
blastp_kegg lcl|pxb:103957662 15 525 + 511 Gaps:73 37.82 1523 72.05 0.0 intron-binding protein aquarius-like
blastp_pdb 2xzl_A 460 509 + 50 Gaps:3 6.61 802 49.06 5e-07 mol:protein length:802 ATP-DEPENDENT HELICASE NAM7
blastp_uniprot_sprot sp|O60306|AQR_HUMAN 16 537 + 522 Gaps:97 42.29 1485 49.04 6e-123 Intron-binding protein aquarius OS Homo sapiens GN AQR PE 1 SV 4
blastp_uniprot_sprot sp|Q8CFQ3|AQR_MOUSE 6 537 + 532 Gaps:97 43.08 1481 47.96 9e-123 Intron-binding protein aquarius OS Mus musculus GN Aqr PE 2 SV 2
blastp_uniprot_sprot sp|O94508|CWF11_SCHPO 86 420 + 335 Gaps:39 23.21 1284 25.17 6e-11 Pre-mRNA-splicing factor cwf11 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cwf11 PE 1 SV 1
blastp_uniprot_sprot sp|Q57568|Y104_METJA 460 517 + 58 none 8.75 663 43.10 8e-07 Uncharacterized ATP-dependent helicase MJ0104 OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN MJ0104 PE 3 SV 1
blastp_uniprot_sprot sp|P30771|NAM7_YEAST 460 509 + 50 Gaps:3 5.46 971 49.06 2e-06 ATP-dependent helicase NAM7 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN NAM7 PE 1 SV 1
blastp_uniprot_sprot sp|O74465|HRR1_SCHPO 457 518 + 62 Gaps:3 6.51 999 41.54 5e-06 Helicase required for RNAi-mediated heterochromatin assembly 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN hrr1 PE 1 SV 2
rpsblast_cdd gnl|CDD|205268 451 510 + 60 Gaps:3 32.31 195 38.10 2e-12 pfam13087 AAA_12 AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.
rpsblast_cdd gnl|CDD|205267 289 400 + 112 Gaps:3 51.36 220 26.55 3e-09 pfam13086 AAA_11 AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.
rpsblast_cdd gnl|CDD|188047 460 510 + 51 Gaps:3 8.48 637 42.59 3e-08 TIGR00376 TIGR00376 DNA helicase putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
rpsblast_cdd gnl|CDD|31309 451 516 + 66 Gaps:4 9.13 767 42.86 5e-08 COG1112 COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication recombination and repair].
rpsblast_kog gnl|CDD|37017 16 520 + 505 Gaps:106 43.86 1320 49.57 1e-129 KOG1806 KOG1806 KOG1806 DEAD box containing helicases [Replication recombination and repair].
rpsblast_kog gnl|CDD|37018 460 509 + 50 Gaps:3 5.17 1025 52.83 4e-09 KOG1807 KOG1807 KOG1807 Helicases [Replication recombination and repair].
rpsblast_kog gnl|CDD|37013 460 508 + 49 Gaps:3 5.56 935 48.08 5e-09 KOG1802 KOG1802 KOG1802 RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification].
rpsblast_kog gnl|CDD|37014 460 515 + 56 Gaps:3 9.09 649 40.68 9e-08 KOG1803 KOG1803 KOG1803 DNA helicase [Replication recombination and repair].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 455 511 57 PF13087 none AAA domain none
PANTHER 6 519 514 PTHR10887 none none none
SUPERFAMILY 452 519 68 SSF52540 none none IPR027417
SUPERFAMILY 313 395 83 SSF52540 none none IPR027417
Gene3D 270 369 100 G3DSA:3.40.50.300 none none IPR027417
Pfam 300 387 88 PF13086 none AAA domain none
PANTHER 6 519 514 PTHR10887:SF5 none none IPR026300
SUPERFAMILY 289 359 71 SSF52540 none none IPR027417

0 Localization

0 Qtllist

0 Targeting