Protein : Qrob_P0565190.2 Q. robur
Protein Identifier  ? Qrob_P0565190.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K12855 - pre-mRNA-processing factor 6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1042  
Kegg Orthology  K12855
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_008068 1 1003 + 1003 Gaps:22 99.03 1033 86.12 0.0 Pre-mRNA splicing factor-related
blastp_kegg lcl|pxb:103948507 1 1003 + 1003 Gaps:18 99.12 1026 84.96 0.0 protein STABILIZED1-like
blastp_kegg lcl|pper:PRUPE_ppa000712mg 1 1003 + 1003 Gaps:18 99.12 1026 85.25 0.0 hypothetical protein
blastp_kegg lcl|cmo:103498810 1 1003 + 1003 Gaps:13 99.12 1023 85.50 0.0 pre-mRNA-processing factor 6
blastp_kegg lcl|csv:101228644 1 1003 + 1003 Gaps:13 99.12 1023 85.40 0.0 pre-mRNA-processing factor 6-like
blastp_kegg lcl|csv:101211412 1 1003 + 1003 Gaps:13 99.12 1023 85.40 0.0 pre-mRNA-processing factor 6-like
blastp_kegg lcl|pxb:103934621 1 1003 + 1003 Gaps:36 99.10 998 85.84 0.0 protein STABILIZED1-like
blastp_kegg lcl|pvu:PHAVU_005G104900g 1 1003 + 1003 Gaps:33 99.14 1041 84.01 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1175540 1 1003 + 1003 Gaps:23 99.13 1031 84.74 0.0 pre-mRNA splicing factor putative
blastp_kegg lcl|pmum:103328547 1 1003 + 1003 Gaps:18 99.12 1026 84.86 0.0 pre-mRNA-processing factor 6
blastp_pdb 3iz6_J 1002 1040 + 39 none 30.47 128 87.18 1e-13 mol:protein length:128 40S ribosomal protein S20 (S10p)
blastp_pdb 2zkq_j 1002 1041 + 40 none 33.61 119 75.00 3e-11 mol:protein length:119 40S Ribosomal protein S20e
blastp_pdb 3u5g_U 1002 1041 + 40 none 33.06 121 60.00 9e-07 mol:protein length:121 40S ribosomal protein S20
blastp_pdb 3u5c_U 1002 1041 + 40 none 33.06 121 60.00 9e-07 mol:protein length:121 40S ribosomal protein S20
blastp_pdb 3o30_N 1002 1041 + 40 none 33.06 121 60.00 9e-07 mol:protein length:121 40S ribosomal protein S20
blastp_pdb 3o2z_N 1002 1041 + 40 none 33.06 121 60.00 9e-07 mol:protein length:121 40S ribosomal protein S20
blastp_pdb 3izb_J 1002 1041 + 40 none 33.06 121 60.00 9e-07 mol:protein length:121 40S ribosomal protein rpS20 (S10p)
blastp_pdb 1s1h_J 1002 1040 + 39 none 39.00 100 58.97 6e-06 mol:protein length:100 40S ribosomal protein S20
blastp_pdb 3jyv_J 1002 1036 + 35 none 36.46 96 65.71 8e-06 mol:protein length:96 40S ribosomal protein S20
blastp_uniprot_sprot sp|Q91YR7|PRP6_MOUSE 79 993 + 915 Gaps:27 98.83 941 56.45 0.0 Pre-mRNA-processing factor 6 OS Mus musculus GN Prpf6 PE 2 SV 1
blastp_uniprot_sprot sp|A1A5S1|PRP6_RAT 79 993 + 915 Gaps:27 98.83 941 56.45 0.0 Pre-mRNA-processing factor 6 OS Rattus norvegicus GN Prpf6 PE 2 SV 1
blastp_uniprot_sprot sp|O94906|PRP6_HUMAN 79 994 + 916 Gaps:27 98.94 941 56.18 0.0 Pre-mRNA-processing factor 6 OS Homo sapiens GN PRPF6 PE 1 SV 1
blastp_uniprot_sprot sp|Q5RCC2|PRP6_PONAB 79 994 + 916 Gaps:27 98.94 941 55.64 0.0 Pre-mRNA-processing factor 6 OS Pongo abelii GN PRPF6 PE 2 SV 1
blastp_uniprot_sprot sp|Q2KJJ0|PRP6_BOVIN 79 993 + 915 Gaps:27 98.83 941 56.24 0.0 Pre-mRNA-processing factor 6 OS Bos taurus GN PRPF6 PE 2 SV 1
blastp_uniprot_sprot sp|Q12381|PRP1_SCHPO 85 993 + 909 Gaps:26 98.57 906 45.80 0.0 Pre-mRNA-splicing factor prp1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp1 PE 1 SV 1
blastp_uniprot_sprot sp|P19735|PRP6_YEAST 86 994 + 909 Gaps:134 98.89 899 30.93 9e-99 Pre-mRNA-splicing factor 6 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PRP6 PE 1 SV 1
blastp_uniprot_sprot sp|P49200|RS201_ARATH 1002 1041 + 40 none 32.26 124 97.50 2e-16 40S ribosomal protein S20-1 OS Arabidopsis thaliana GN RPS20A PE 2 SV 2
blastp_uniprot_sprot sp|Q9STY6|RS202_ARATH 1002 1041 + 40 none 32.79 122 97.50 2e-16 40S ribosomal protein S20-2 OS Arabidopsis thaliana GN RPS20B PE 2 SV 1
blastp_uniprot_sprot sp|Q527H0|CLF1_MAGO7 421 935 + 515 Gaps:153 69.46 691 34.58 1e-13 Pre-mRNA-splicing factor CLF1 OS Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN CLF1 PE 3 SV 1
rpsblast_cdd gnl|CDD|203444 91 251 + 161 Gaps:30 100.00 131 61.83 8e-49 pfam06424 PRP1_N PRP1 splicing factor N-terminal. This domain is specific to the N-terminal part of the prp1 splicing factor which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.

36 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 1002 1040 39 G3DSA:3.30.70.600 none none IPR027486
SUPERFAMILY 349 415 67 SSF48452 none none none
Pfam 1002 1038 37 PF00338 none Ribosomal protein S10p/S20e IPR027486
Coils 778 799 22 Coil none none none
SUPERFAMILY 488 584 97 SSF48452 none none none
SMART 685 717 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 752 784 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 617 649 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 386 418 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 719 750 32 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 419 448 30 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 854 886 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 918 950 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 820 852 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 352 384 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 477 509 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 510 539 30 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 786 818 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
Pfam 773 804 32 PF07719 none Tetratricopeptide repeat IPR013105
PANTHER 82 286 205 PTHR11246:SF1 none none IPR027108
PANTHER 328 996 669 PTHR11246:SF1 none none IPR027108
SUPERFAMILY 1001 1038 38 SSF54999 none none IPR027486
ProSiteProfiles 738 873 136 PS50293 none TPR repeat region circular profile. IPR013026
PANTHER 82 286 205 PTHR11246 none none none
PANTHER 328 996 669 PTHR11246 none none none
SUPERFAMILY 773 976 204 SSF48452 none none none
Gene3D 741 992 252 G3DSA:1.25.40.10 none none IPR011990
Gene3D 353 557 205 G3DSA:1.25.40.10 none none IPR011990
Coils 812 833 22 Coil none none none
SUPERFAMILY 567 773 207 SSF48452 none none none

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting