Protein : Qrob_P0380030.2 Q. robur
Protein Identifier  ? Qrob_P0380030.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K06063 - SNW domain-containing protein 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 267  
Kegg Orthology  K06063
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005681 spliceosomal complex Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100783576 3 266 + 264 Gaps:49 51.24 603 58.90 1e-78 SNW/SKI-interacting protein-like
blastp_kegg lcl|pda:103723728 3 266 + 264 Gaps:60 50.34 596 59.33 3e-78 SNW/SKI-interacting protein-like
blastp_kegg lcl|pop:POPTR_0018s09310g 3 266 + 264 Gaps:52 50.16 610 63.40 7e-78 POPTRDRAFT_578522 chromatin family protein
blastp_kegg lcl|csv:101230971 3 266 + 264 Gaps:52 50.75 603 60.46 2e-77 puff-specific protein Bx42-like
blastp_kegg lcl|csv:101203346 3 266 + 264 Gaps:52 50.75 603 60.46 2e-77 puff-specific protein Bx42-like
blastp_kegg lcl|cic:CICLE_v10011323mg 3 266 + 264 Gaps:54 51.16 606 61.29 5e-77 hypothetical protein
blastp_kegg lcl|cit:102606884 3 266 + 264 Gaps:54 51.16 606 61.29 5e-77 SNW/SKI-interacting protein-like
blastp_kegg lcl|cmo:103492552 3 265 + 263 Gaps:52 50.58 603 60.66 6e-77 SNW/SKI-interacting protein-like
blastp_kegg lcl|csv:101211333 3 265 + 263 Gaps:54 50.74 605 59.93 2e-76 SNW domain-containing protein 1-like
blastp_kegg lcl|vvi:100245841 3 266 + 264 Gaps:52 50.83 602 62.42 2e-76 SNW domain-containing protein 1-like
blastp_uniprot_sprot sp|O80653|SKIP_ARATH 3 260 + 258 Gaps:51 49.43 613 54.79 1e-66 SNW/SKI-interacting protein OS Arabidopsis thaliana GN SKIP PE 1 SV 1
blastp_uniprot_sprot sp|P39736|BX42_DROME 3 261 + 259 Gaps:59 48.26 547 38.26 1e-30 Puff-specific protein Bx42 OS Drosophila melanogaster GN Bx42 PE 1 SV 1
blastp_uniprot_sprot sp|Q13573|SNW1_HUMAN 3 244 + 242 Gaps:60 44.78 536 40.00 3e-30 SNW domain-containing protein 1 OS Homo sapiens GN SNW1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R7R9|SNW1_PONAB 3 244 + 242 Gaps:60 44.78 536 40.00 3e-30 SNW domain-containing protein 1 OS Pongo abelii GN SNW1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CSN1|SNW1_MOUSE 3 244 + 242 Gaps:60 44.78 536 40.00 3e-30 SNW domain-containing protein 1 OS Mus musculus GN Snw1 PE 1 SV 3
blastp_uniprot_sprot sp|Q1JQE0|SNW1_BOVIN 3 244 + 242 Gaps:60 44.78 536 40.00 4e-30 SNW domain-containing protein 1 OS Bos taurus GN SNW1 PE 2 SV 1
blastp_uniprot_sprot sp|Q4WEH7|PRP45_ASPFU 3 245 + 243 Gaps:50 46.46 579 34.94 3e-23 Pre-mRNA-processing protein 45 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN prp45 PE 3 SV 1
blastp_uniprot_sprot sp|Q5AU50|PRP45_EMENI 3 245 + 243 Gaps:45 46.31 583 32.59 3e-21 Pre-mRNA-processing protein 45 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN prp45 PE 3 SV 1
blastp_uniprot_sprot sp|P0CR57|PRP45_CRYNB 3 247 + 245 Gaps:51 49.49 594 30.27 3e-16 Pre-mRNA-processing protein 45 OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN PRP45 PE 3 SV 1
blastp_uniprot_sprot sp|P0CR56|PRP45_CRYNJ 3 247 + 245 Gaps:51 49.49 594 30.27 3e-16 Pre-mRNA-processing protein 45 OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN PRP45 PE 3 SV 1
rpsblast_cdd gnl|CDD|190402 3 67 + 65 none 41.14 158 61.54 2e-18 pfam02731 SKIP_SNW SKIP/SNW domain. This domain is found in chromatin proteins.
rpsblast_kog gnl|CDD|37652 3 247 + 245 Gaps:61 47.43 506 44.58 5e-36 KOG2441 KOG2441 KOG2441 mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification Chromatin structure and dynamics].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 3 264 262 PTHR12096 none none IPR017862
Pfam 3 67 65 PF02731 none SKIP/SNW domain IPR004015
Coils 42 67 26 Coil none none none

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting