Protein : Qrob_P0742610.2 Q. robur
Protein Identifier  ? Qrob_P0742610.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0147//KOG0151//KOG0334//KOG0415//KOG0670//KOG1874//KOG1999//KOG2217//KOG2888//KOG4676 - Transcriptional coactivator CAPER (RRM superfamily) [Transcription]. // Predicted splicing regulator contains RRM SWAP and RPR domains [General function prediction only]. // RNA helicase [RNA processing and modification]. // Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification protein turnover chaperones]. // U4/U6-associated splicing factor PRP4 [RNA processing and modification]. // KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4 [Transcription]. // RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]. // U4/U6.U5 snRNP associated protein [RNA processing and modification]. // Putative RNA binding protein [General function prediction only]. // Splicing factor arginine/serine-rich [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 801  
Kegg Orthology  K11984
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000914mg 16 800 + 785 Gaps:101 91.17 963 64.46 0.0 hypothetical protein
blastp_kegg lcl|vvi:100266959 1 799 + 799 Gaps:96 91.02 902 63.70 0.0 uncharacterized LOC100266959
blastp_kegg lcl|mdm:103453126 17 800 + 784 Gaps:88 90.91 946 62.79 0.0 U4/U6.U5 tri-snRNP-associated protein 1-like
blastp_kegg lcl|cam:101512207 1 769 + 769 Gaps:76 86.88 869 66.36 0.0 U4/U6.U5 tri-snRNP-associated protein 1-like
blastp_kegg lcl|pxb:103959226 16 800 + 785 Gaps:93 91.04 949 62.50 0.0 U4/U6.U5 tri-snRNP-associated protein 1
blastp_kegg lcl|pop:POPTR_0001s11550g 30 800 + 771 Gaps:64 88.28 862 64.78 0.0 POPTRDRAFT_640254 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0800560 1 769 + 769 Gaps:84 86.94 873 65.61 0.0 hypothetical protein
blastp_kegg lcl|gmx:100793984 1 800 + 800 Gaps:92 90.93 882 63.22 0.0 zinc finger CCCH domain-containing protein 13-like
blastp_kegg lcl|mdm:103403924 16 800 + 785 Gaps:108 91.01 946 59.81 0.0 U4/U6.U5 tri-snRNP-associated protein 1-like
blastp_kegg lcl|tcc:TCM_032152 30 800 + 771 Gaps:59 88.86 907 64.64 0.0 U4/U6.U5 tri-snRNP-associated protein 1 isoform 1
blastp_uniprot_sprot sp|Q9Z315|SNUT1_MOUSE 229 453 + 225 Gaps:34 28.41 806 32.31 2e-12 U4/U6.U5 tri-snRNP-associated protein 1 OS Mus musculus GN Sart1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5XIW8|SNUT1_RAT 229 453 + 225 Gaps:34 28.41 806 32.31 2e-12 U4/U6.U5 tri-snRNP-associated protein 1 OS Rattus norvegicus GN Sart1 PE 2 SV 1
blastp_uniprot_sprot sp|O43290|SNUT1_HUMAN 229 453 + 225 Gaps:36 28.62 800 32.75 3e-11 U4/U6.U5 tri-snRNP-associated protein 1 OS Homo sapiens GN SART1 PE 1 SV 1
blastp_uniprot_sprot sp|F1QBY1|NIPLB_DANRE 31 192 + 162 Gaps:69 10.15 2876 58.90 2e-09 Nipped-B-like protein B OS Danio rerio GN nipblb PE 2 SV 1
rpsblast_cdd gnl|CDD|202600 231 754 + 524 Gaps:102 84.91 603 34.96 8e-50 pfam03343 SART-1 SART-1 family. SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells.
rpsblast_cdd gnl|CDD|162459 16 208 + 193 Gaps:36 24.56 509 50.40 2e-11 TIGR01642 U2AF_lg U2 snRNP auxilliary factor large subunit splicing factor. These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants metazoa and fungi.
rpsblast_cdd gnl|CDD|183675 11 208 + 198 Gaps:30 28.12 672 37.57 3e-10 PRK12678 PRK12678 transcription termination factor Rho Provisional.
rpsblast_kog gnl|CDD|37428 115 758 + 644 Gaps:23 89.22 705 30.37 6e-56 KOG2217 KOG2217 KOG2217 U4/U6.U5 snRNP associated protein [RNA processing and modification].
rpsblast_kog gnl|CDD|38099 7 279 + 273 Gaps:63 49.45 453 49.55 3e-11 KOG2888 KOG2888 KOG2888 Putative RNA binding protein [General function prediction only].
rpsblast_kog gnl|CDD|35369 11 210 + 200 Gaps:21 29.33 549 40.99 7e-11 KOG0147 KOG0147 KOG0147 Transcriptional coactivator CAPER (RRM superfamily) [Transcription].
rpsblast_kog gnl|CDD|35889 4 300 + 297 Gaps:27 39.10 752 25.17 3e-10 KOG0670 KOG0670 KOG0670 U4/U6-associated splicing factor PRP4 [RNA processing and modification].
rpsblast_kog gnl|CDD|39875 6 277 + 272 Gaps:25 64.09 479 42.35 1e-09 KOG4676 KOG4676 KOG4676 Splicing factor arginine/serine-rich [RNA processing and modification].
rpsblast_kog gnl|CDD|37085 11 295 + 285 Gaps:84 23.43 1477 36.13 2e-09 KOG1874 KOG1874 KOG1874 KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4 [Transcription].
rpsblast_kog gnl|CDD|35555 28 299 + 272 Gaps:36 20.86 997 38.94 6e-09 KOG0334 KOG0334 KOG0334 RNA helicase [RNA processing and modification].
rpsblast_kog gnl|CDD|35636 33 205 + 173 Gaps:9 34.24 479 42.07 3e-08 KOG0415 KOG0415 KOG0415 Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification protein turnover chaperones].
rpsblast_kog gnl|CDD|35373 12 176 + 165 Gaps:15 19.61 877 23.26 1e-07 KOG0151 KOG0151 KOG0151 Predicted splicing regulator contains RRM SWAP and RPR domains [General function prediction only].
rpsblast_kog gnl|CDD|37210 47 209 + 163 Gaps:11 15.04 1024 24.68 1e-07 KOG1999 KOG1999 KOG1999 RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 490 525 36 Coil none none none
Pfam 184 754 571 PF03343 none SART-1 family IPR005011
Coils 148 169 22 Coil none none none
PANTHER 105 758 654 PTHR14152 none none none
PANTHER 105 758 654 PTHR14152:SF5 none none IPR005011
Coils 230 251 22 Coil none none none
Coils 408 436 29 Coil none none none

0 Localization

0 Qtllist

0 Targeting