Blast Analysis : gnl|CDD|162459

Analysis  rpsblast_cdd Start  16
End  208 Strand  +
Length  193 Note  Gaps:36
Hit Coverage  24.56 Hit Length  509
Hit Pident  50.40 E Val  2e-11
Hit Description  TIGR01642 U2AF_lg U2 snRNP auxilliary factor large subunit splicing factor. These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants metazoa and fungi. Hit Pcons  16.00
Name  Qrob_P0742610.2
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1 Protein

Protein Identifier
Organism . Name 		Score Score Type Protein Description Alias (in v1) Code Enzyme Gene Prediction Quality
Qrob_P0742610.2 Quercus robur 100.0 egn (M=1) KOG0147//KOG0151//KOG0334//KOG0415//KOG0670//KOG1874//KOG1999//KOG2217//KOG2888//KOG4676 - Transcriptional coactivator CAPER (RRM superfamily) [Transcription]. // Predicted splicing regulator contains RRM SWAP and RPR domains [General function prediction only]. // RNA helicase [RNA processing and modification]. // Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification protein turnover chaperones]. // U4/U6-associated splicing factor PRP4 [RNA processing and modification]. // KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4 [Transcription]. // RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]. // U4/U6.U5 snRNP associated protein [RNA processing and modification]. // Putative RNA binding protein [General function prediction only]. // Splicing factor arginine/serine-rich [RNA processing and modification].     validated