Protein : Qrob_P0612730.2 Q. robur
Protein Identifier  ? Qrob_P0612730.2 Organism . Name  Quercus robur
Score  10.1 Score Type  egn
Protein Description  (M=1) KOG0117//KOG0119//KOG0122//KOG0123//KOG0124//KOG0127//KOG0144//KOG0145//KOG0148//KOG1588 - Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]. // Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]. // Translation initiation factor 3 subunit g (eIF-3g) [Translation ribosomal structure and biogenesis]. // Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]. // Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]. // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]. // RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]. // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 913  
Kegg Orthology  K13095
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0000398 mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO:0045131 pre-mRNA branch point binding Interacting selectively and non-covalently with a pre-mRNA branch point sequence, located upstream of the 3' splice site.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100261746 107 904 + 798 Gaps:180 95.61 751 43.73 2e-103 uncharacterized LOC100261746
blastp_kegg lcl|pda:103719402 204 691 + 488 Gaps:125 57.51 746 46.39 3e-86 branchpoint-bridging protein-like
blastp_kegg lcl|atr:s00009p00262590 203 691 + 489 Gaps:116 65.53 705 40.48 4e-78 AMTR_s00009p00262590 hypothetical protein
blastp_kegg lcl|mus:103989140 39 690 + 652 Gaps:160 75.29 769 40.93 3e-74 uncharacterized protein LOC103989140
blastp_kegg lcl|brp:103857190 239 691 + 453 Gaps:169 56.56 762 43.16 1e-73 branchpoint-bridging protein
blastp_kegg lcl|pda:103715689 227 691 + 465 Gaps:159 55.39 789 42.33 2e-71 branchpoint-bridging protein-like
blastp_kegg lcl|mus:103986034 239 691 + 453 Gaps:140 53.63 772 43.72 1e-70 branchpoint-bridging protein-like
blastp_kegg lcl|ppp:PHYPADRAFT_185832 194 690 + 497 Gaps:50 60.27 677 46.08 8e-65 hypothetical protein
blastp_kegg lcl|ppp:PHYPADRAFT_189930 185 690 + 506 Gaps:47 50.26 774 46.79 6e-63 hypothetical protein
blastp_kegg lcl|atr:s00078p00155240 227 691 + 465 Gaps:93 54.91 805 43.21 2e-61 AMTR_s00078p00155240 hypothetical protein
blastp_pdb 2bl5_A 339 441 + 103 Gaps:17 85.71 140 42.50 5e-17 mol:protein length:140 MGC83862 PROTEIN
blastp_pdb 1g2e_A 473 690 + 218 Gaps:57 99.40 167 39.16 5e-17 mol:protein length:167 PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD
blastp_pdb 1fxl_A 473 690 + 218 Gaps:57 99.40 167 39.16 5e-17 mol:protein length:167 PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD
blastp_pdb 1fnx_H 473 690 + 218 Gaps:55 87.93 174 39.22 2e-16 mol:protein length:174 HU ANTIGEN C
blastp_pdb 3sxl_C 471 695 + 225 Gaps:57 94.57 184 36.21 1e-15 mol:protein length:184 PROTEIN (SEX-LETHAL)
blastp_pdb 3sxl_B 471 695 + 225 Gaps:57 94.57 184 36.21 1e-15 mol:protein length:184 PROTEIN (SEX-LETHAL)
blastp_pdb 3sxl_A 471 695 + 225 Gaps:57 94.57 184 36.21 1e-15 mol:protein length:184 PROTEIN (SEX-LETHAL)
blastp_pdb 1b7f_B 475 690 + 216 Gaps:57 98.21 168 36.97 3e-15 mol:protein length:168 PROTEIN (SXL-LETHAL PROTEIN)
blastp_pdb 1b7f_A 475 690 + 216 Gaps:57 98.21 168 36.97 3e-15 mol:protein length:168 PROTEIN (SXL-LETHAL PROTEIN)
blastp_pdb 1k1g_A 337 445 + 109 Gaps:13 93.13 131 36.89 6e-13 mol:protein length:131 SF1-Bo isoform
blastp_uniprot_sprot sp|Q54BM5|BBP_DICDI 207 445 + 239 Gaps:48 49.30 501 38.46 4e-29 Branchpoint-bridging protein OS Dictyostelium discoideum GN sf1 PE 3 SV 1
blastp_uniprot_sprot sp|P0CO44|BBP_CRYNJ 210 455 + 246 Gaps:48 51.28 546 30.36 5e-28 Branchpoint-bridging protein OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN BBP PE 3 SV 1
blastp_uniprot_sprot sp|P0CO45|BBP_CRYNB 210 455 + 246 Gaps:48 51.28 546 30.36 5e-28 Branchpoint-bridging protein OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN BBP PE 3 SV 1
blastp_uniprot_sprot sp|Q4P0H7|BBP_USTMA 233 456 + 224 Gaps:48 40.32 625 29.76 2e-24 Branchpoint-bridging protein OS Ustilago maydis (strain 521 / FGSC 9021) GN BBP PE 3 SV 1
blastp_uniprot_sprot sp|O74555|BBP_SCHPO 205 455 + 251 Gaps:40 48.89 587 28.22 9e-23 Branchpoint-bridging protein OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN bpb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8NIW7|BBP_NEUCR 221 455 + 235 Gaps:46 43.99 607 31.46 4e-22 Branchpoint-bridging protein OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN bbp-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q4WXV6|BBP_ASPFU 172 455 + 284 Gaps:63 52.83 566 29.77 6e-22 Branchpoint-bridging protein OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN bbp PE 3 SV 1
blastp_uniprot_sprot sp|Q15637|SF01_HUMAN 235 445 + 211 Gaps:36 37.72 639 31.54 1e-21 Splicing factor 1 OS Homo sapiens GN SF1 PE 1 SV 4
blastp_uniprot_sprot sp|Q64213|SF01_MOUSE 235 445 + 211 Gaps:36 36.91 653 31.54 3e-21 Splicing factor 1 OS Mus musculus GN Sf1 PE 1 SV 6
blastp_uniprot_sprot sp|Q1JQ73|ELV1A_XENLA 473 694 + 222 Gaps:72 95.55 337 36.34 2e-19 ELAV-like protein 1-A OS Xenopus laevis GN elavl1-a PE 1 SV 1

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 606 690 85 SSF54928 none none none
SUPERFAMILY 465 551 87 SSF54928 none none none
ProSiteProfiles 614 692 79 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Gene3D 337 443 107 G3DSA:3.30.1370.10 none none IPR004088
ProSiteProfiles 475 553 79 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Pfam 616 684 69 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
Pfam 477 545 69 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
ProSiteProfiles 355 416 62 PS50084 none Type-1 KH domain profile. IPR004088
Coils 268 296 29 Coil none none none
Pfam 356 412 57 PF00013 none KH domain IPR004088
SMART 476 549 74 SM00360 none RNA recognition motif IPR000504
SMART 615 688 74 SM00360 none RNA recognition motif IPR000504
PANTHER 167 441 275 PTHR11208:SF45 none none IPR031150
Gene3D 471 551 81 G3DSA:3.30.70.330 none none IPR012677
Gene3D 597 690 94 G3DSA:3.30.70.330 none none IPR012677
SUPERFAMILY 340 443 104 SSF54791 none none IPR004088
Coils 49 70 22 Coil none none none
PANTHER 167 441 275 PTHR11208 none none none
SMART 338 421 84 SM00322 none K homology RNA-binding domain IPR004087

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4

0 Targeting