GO Term : GO:0043565 sequence-specific DNA binding GO

Namespace  molecular_function Obsolete  false
description  Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

0 Cross References

1 Ontology

Name
GO

7 Parents

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0003674 molecular_function Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
GO:1901363 heterocyclic compound binding Interacting selectively and non-covalently with heterocyclic compound.
GO:0097159 organic cyclic compound binding Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure.

160 Protein

Protein Identifier
Organism . Name
Score Score Type Protein Description Alias (in v1) Code Enzyme Gene Prediction Quality
Qrob_P0002960.2 Quercus robur 100.0 egn (M=4) PTHR31221:SF8 - WRKY TRANSCRIPTION FACTOR 57-RELATED (PTHR31221:SF8)     validated
Qrob_P0004640.2 Quercus robur 98.0 egn (M=7) PTHR10071//PTHR10071:SF161 - TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR) // SUBFAMILY NOT NAMED (PTHR10071:SF161)     validated
Qrob_P0011880.2 Quercus robur 99.0 egn (M=8) K14431 - transcription factor TGA     validated
Qrob_P0013360.2 Quercus robur 100.0 egn (M=1) KOG0483//KOG0484//KOG0485//KOG0487//KOG0488//KOG0493//KOG0494//KOG0842//KOG0843//KOG4577 - Transcription factor HEX contains HOX and HALZ domains [Transcription]. // Transcription factor PHOX2/ARIX contains HOX domain [Transcription]. // Transcription factor NKX-5.1/HMX1 contains HOX domain [Transcription]. // Transcription factor Abd-B contains HOX domain [Transcription]. // Transcription factor BarH and related HOX domain proteins [General function prediction only]. // Transcription factor Engrailed contains HOX domain [General function prediction only]. // Transcription factor CHX10 and related HOX domain proteins [General function prediction only]. // Transcription factor tinman/NKX2-3 contains HOX domain [Transcription]. // Transcription factor EMX1 and related HOX domain proteins [Transcription]. // Transcription factor LIM3 contains LIM and HOX domains [Transcription].     validated
Qrob_P0018160.2 Quercus robur 82.3 egn (M=1) PTHR10252//PTHR10252:SF25 - HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED // SUBFAMILY NOT NAMED   EC:2.7.7.7 validated
Qrob_P0020400.2 Quercus robur 0.0 egn (M=4) PTHR24326:SF122 - HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-12-RELATED (PTHR24326:SF122)     validated
Qrob_P0023260.2 Quercus robur 92.1 egn (M=8) K14431 - transcription factor TGA     validated
Qrob_P0035400.2 Quercus robur 73.0 egn (M=8) PF07716 - Basic region leucine zipper     validated
Qrob_P0045340.2 Quercus robur 100.0 egn (M=1) KOG0483//KOG0485//KOG0488//KOG0842 - Transcription factor HEX contains HOX and HALZ domains [Transcription]. // Transcription factor NKX-5.1/HMX1 contains HOX domain [Transcription]. // Transcription factor BarH and related HOX domain proteins [General function prediction only]. // Transcription factor tinman/NKX2-3 contains HOX domain [Transcription].     validated
Qrob_P0046890.2 Quercus robur 100.0 egn (M=2) PF03789//PF05920 - ELK domain // Homeobox KN domain     validated
Qrob_P0062630.2 Quercus robur 100.0 egn (M=8) PF07716 - Basic region leucine zipper     validated
Qrob_P0064510.2 Quercus robur 0.0 egn (M=1) KOG0483//KOG0488//KOG0493//KOG0494//KOG0843 - Transcription factor HEX contains HOX and HALZ domains [Transcription]. // Transcription factor BarH and related HOX domain proteins [General function prediction only]. // Transcription factor Engrailed contains HOX domain [General function prediction only]. // Transcription factor CHX10 and related HOX domain proteins [General function prediction only]. // Transcription factor EMX1 and related HOX domain proteins [Transcription].     validated
Qrob_P0064810.2 Quercus robur 100.0 egn (M=2) PTHR11064:SF27 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED (PTHR11064:SF27)     validated
Qrob_P0064840.2 Quercus robur 74.9 egn (M=3) PTHR11064:SF20 - CG12310-PA (RE02926P)     validated
Qrob_P0070920.2 Quercus robur 96.2 egn (M=8) PTHR31221:SF1 - WRKY TRANSCRIPTION FACTOR 1-RELATED (PTHR31221:SF1)     validated
Qrob_P0073230.2 Quercus robur 100.0 egn (M=4) PTHR31221:SF8 - WRKY TRANSCRIPTION FACTOR 57-RELATED (PTHR31221:SF8)     validated
Qrob_P0080370.2 Quercus robur 100.0 egn (M=1) KOG0483//KOG0842 - Transcription factor HEX contains HOX and HALZ domains [Transcription]. // Transcription factor tinman/NKX2-3 contains HOX domain [Transcription].     validated
Qrob_P0082940.2 Quercus robur 100.0 egn (M=6) PTHR10015//PTHR10015:SF137 - HEAT SHOCK TRANSCRIPTION FACTOR // SUBFAMILY NOT NAMED     validated
Qrob_P0084220.2 Quercus robur     (M=1) KOG0483//KOG0485//KOG0488//KOG0489//KOG0492//KOG0493//KOG0494//KOG0843//KOG0848//KOG0850 - Transcription factor HEX contains HOX and HALZ domains [Transcription]. // Transcription factor NKX-5.1/HMX1 contains HOX domain [Transcription]. // Transcription factor BarH and related HOX domain proteins [General function prediction only]. // Transcription factor zerknullt and related HOX domain proteins [General function prediction only]. // Transcription factor MSH contains HOX domain [General function prediction only]. // Transcription factor Engrailed contains HOX domain [General function prediction only]. // Transcription factor CHX10 and related HOX domain proteins [General function prediction only]. // Transcription factor EMX1 and related HOX domain proteins [Transcription]. // Transcription factor Caudal contains HOX domain [Transcription]. // Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]. Qrob_P0137260.1   manual_v1
Qrob_P0088650.2 Quercus robur 100.0 egn (M=10) K09419 - heat shock transcription factor, other eukaryote     validated
Qrob_P0089800.2 Quercus robur 63.1 egn (M=2) PTHR31429:SF3 - WRKY TRANSCRIPTION FACTOR 40-RELATED (PTHR31429:SF3)     validated
Qrob_P0090070.2 Quercus robur 100.0 egn (M=1) PTHR22952//PTHR22952:SF85 - CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED // SUBFAMILY NOT NAMED     validated
Qrob_P0095830.2 Quercus robur 99.1 egn (M=41) PF03106 - WRKY DNA -binding domain     validated
Qrob_P0098240.2 Quercus robur 100.0 egn (M=1) KOG0483//KOG0485//KOG0487//KOG0488//KOG0489//KOG0842//KOG0843//KOG0848//KOG0850 - Transcription factor HEX contains HOX and HALZ domains [Transcription]. // Transcription factor NKX-5.1/HMX1 contains HOX domain [Transcription]. // Transcription factor Abd-B contains HOX domain [Transcription]. // Transcription factor BarH and related HOX domain proteins [General function prediction only]. // Transcription factor zerknullt and related HOX domain proteins [General function prediction only]. // Transcription factor tinman/NKX2-3 contains HOX domain [Transcription]. // Transcription factor EMX1 and related HOX domain proteins [Transcription]. // Transcription factor Caudal contains HOX domain [Transcription]. // Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription].     validated
Qrob_P0102050.2 Quercus robur 58.1 egn (M=7) PTHR10071//PTHR10071:SF161 - TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR) // SUBFAMILY NOT NAMED (PTHR10071:SF161)     validated
Qrob_P0104270.2 Quercus robur 100.0 egn (M=1) PTHR31429:SF1 - WRKY FAMILY TRANSCRIPTION FACTOR-RELATED (PTHR31429:SF1)     validated
Qrob_P0107070.2 Quercus robur 100.0 egn (M=11) PTHR22952:SF110 - BZIP PROTEIN (ATBZIP48)-RELATED (PTHR22952:SF110)     validated
Qrob_P0107870.2 Quercus robur 74.5 egn (M=11) PTHR22952:SF110 - BZIP PROTEIN (ATBZIP48)-RELATED (PTHR22952:SF110)     validated
Qrob_P0112590.2 Quercus robur 100.0 egn (M=6) PTHR10015//PTHR10015:SF137 - HEAT SHOCK TRANSCRIPTION FACTOR // SUBFAMILY NOT NAMED     validated
Qrob_P0121010.2 Quercus robur 0.0 egn (M=8) PTHR31221:SF1 - WRKY TRANSCRIPTION FACTOR 1-RELATED (PTHR31221:SF1)     validated

55 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
is_a GO:0043565 GO:0000182
is_a GO:0043565 GO:0000976
is_a GO:0043565 GO:0000977
is_a GO:0043565 GO:0000978
is_a GO:0043565 GO:0000979
is_a GO:0043565 GO:0000980
is_a GO:0043565 GO:0000984
is_a GO:0043565 GO:0000985
is_a GO:0043565 GO:0000986
is_a GO:0043565 GO:0000987
is_a GO:0043565 GO:0000992
is_a GO:0043565 GO:0000997
is_a GO:0043565 GO:0001002
is_a GO:0043565 GO:0001003
is_a GO:0043565 GO:0001006
is_a GO:0043565 GO:0001030
is_a GO:0043565 GO:0001039
is_a GO:0043565 GO:0001044
is_a GO:0043565 GO:0001045
is_a GO:0043565 GO:0001046
is_a GO:0043565 GO:0001145
is_a GO:0043565 GO:0001147
is_a GO:0043565 GO:0001148
is_a GO:0043565 GO:0001150
is_a GO:0043565 GO:0001158
is_a GO:0043565 GO:0001162
is_a GO:0043565 GO:0001164
is_a GO:0043565 GO:0001165
is_a GO:0043565 GO:0001166
is_a GO:0043565 GO:0003680

1 Synonyms

Name Type
sequence specific DNA binding synonym