Protein : Qrob_P0089800.2 Q. robur
Protein Identifier  ? Qrob_P0089800.2 Organism . Name  Quercus robur
Score  63.1 Score Type  egn
Protein Description  (M=2) PTHR31429:SF3 - WRKY TRANSCRIPTION FACTOR 40-RELATED (PTHR31429:SF3) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 255  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100266177 4 253 + 250 Gaps:15 95.40 261 57.83 4e-82 WRKY transcription factor 18-like
blastp_kegg lcl|tcc:TCM_036912 4 245 + 242 Gaps:17 95.29 255 58.02 4e-80 Transcription factor putative
blastp_kegg lcl|pop:POPTR_0018s02480g 4 233 + 230 Gaps:23 88.93 271 57.26 5e-75 POPTRDRAFT_779120 hypothetical protein
blastp_kegg lcl|gmx:100170679 1 250 + 250 Gaps:14 91.37 278 53.15 2e-71 WRKY63 transcription factor
blastp_kegg lcl|gmx:100791870 1 250 + 250 Gaps:22 91.37 278 51.97 1e-68 probable WRKY transcription factor 40-like
blastp_kegg lcl|cit:102627570 4 249 + 246 Gaps:35 94.96 258 56.33 1e-68 probable WRKY transcription factor 40-like
blastp_kegg lcl|cam:101508555 1 248 + 248 Gaps:16 94.34 265 51.20 3e-68 probable WRKY transcription factor 40-like
blastp_kegg lcl|cic:CICLE_v10009250mg 4 249 + 246 Gaps:35 94.96 258 55.92 2e-67 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa009939mg 4 245 + 242 Gaps:56 92.99 271 53.57 9e-67 hypothetical protein
blastp_kegg lcl|mtr:MTR_1g013790 1 248 + 248 Gaps:23 92.16 255 52.34 2e-66 WRKY transcription factor
blastp_pdb 2ayd_A 90 150 + 61 Gaps:1 78.95 76 55.00 7e-18 mol:protein length:76 WRKY transcription factor 1
blastp_pdb 2lex_A 90 150 + 61 Gaps:1 76.92 78 51.67 4e-17 mol:protein length:78 Probable WRKY transcription factor 4
blastp_pdb 1wj2_A 90 150 + 61 Gaps:1 76.92 78 51.67 4e-17 mol:protein length:78 Probable WRKY transcription factor 4
blastp_uniprot_sprot sp|Q9SAH7|WRK40_ARATH 8 248 + 241 Gaps:56 87.75 302 39.62 3e-46 Probable WRKY transcription factor 40 OS Arabidopsis thaliana GN WRKY40 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C5T4|WRK18_ARATH 8 250 + 243 Gaps:70 84.19 310 38.31 2e-40 WRKY transcription factor 18 OS Arabidopsis thaliana GN WRKY18 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SK33|WRK60_ARATH 8 248 + 241 Gaps:53 82.66 271 39.73 4e-36 Probable WRKY transcription factor 60 OS Arabidopsis thaliana GN WRKY60 PE 1 SV 1
blastp_uniprot_sprot sp|Q93WT0|WRK31_ARATH 76 149 + 74 none 13.75 538 54.05 1e-22 Probable WRKY transcription factor 31 OS Arabidopsis thaliana GN WRKY31 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C519|WRKY6_ARATH 76 149 + 74 none 13.38 553 54.05 1e-22 WRKY transcription factor 6 OS Arabidopsis thaliana GN WRKY6 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C9F0|WRKY9_ARATH 76 195 + 120 Gaps:9 31.28 374 43.59 3e-22 Probable WRKY transcription factor 9 OS Arabidopsis thaliana GN WRKY9 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XEC3|WRK42_ARATH 76 149 + 74 none 14.02 528 52.70 5e-22 Probable WRKY transcription factor 42 OS Arabidopsis thaliana GN WRKY42 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VWV6|WRK61_ARATH 91 149 + 59 none 12.29 480 62.71 4e-21 Probable WRKY transcription factor 61 OS Arabidopsis thaliana GN WRKY61 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXG8|WRK72_ARATH 91 149 + 59 none 10.77 548 61.02 9e-21 Probable WRKY transcription factor 72 OS Arabidopsis thaliana GN WRKY72 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAR4|WRK36_ARATH 77 205 + 129 Gaps:20 36.43 387 37.59 4e-19 Probable WRKY transcription factor 36 OS Arabidopsis thaliana GN WRKY36 PE 2 SV 1
rpsblast_cdd gnl|CDD|197869 91 149 + 59 none 100.00 59 54.24 5e-25 smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants including pathogen defense senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T) which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
rpsblast_cdd gnl|CDD|145969 91 150 + 60 Gaps:1 98.33 60 54.24 1e-22 pfam03106 WRKY WRKY DNA -binding domain.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 89 150 62 SSF118290 none none IPR003657
Gene3D 82 150 69 G3DSA:2.20.25.80 none none IPR003657
PANTHER 76 248 173 PTHR31429:SF3 none none none
PANTHER 76 248 173 PTHR31429 none none none
SMART 91 151 61 SM00774 none DNA binding domain IPR003657
Pfam 91 150 60 PF03106 none WRKY DNA -binding domain IPR003657
Coils 5 47 43 Coil none none none
ProSiteProfiles 86 152 67 PS50811 none WRKY domain profile. IPR003657

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting