Protein : Qrob_P0020400.2 Q. robur
Protein Identifier  ? Qrob_P0020400.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) PTHR24326:SF122 - HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-12-RELATED (PTHR24326:SF122) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 276  
Kegg Orthology  K09338
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015645 82 275 + 194 Gaps:15 85.29 238 52.71 1e-56 Homeobox 7 putative
blastp_kegg lcl|pop:POPTR_0001s11380g 76 261 + 186 Gaps:6 97.96 196 53.65 2e-52 POPTRDRAFT_548258 homeobox leucine zipper family protein
blastp_kegg lcl|pop:POPTR_0003s14700g 106 275 + 170 Gaps:9 97.79 181 57.06 2e-50 hypothetical protein
blastp_kegg lcl|gmx:100797862 82 275 + 194 Gaps:19 88.66 238 45.50 9e-44 homeobox-leucine zipper protein ATHB-12-like
blastp_kegg lcl|cit:102608237 79 275 + 197 Gaps:19 85.84 226 47.42 2e-43 homeobox-leucine zipper protein ATHB-12-like
blastp_kegg lcl|pop:POPTR_0014s09860g 91 275 + 185 Gaps:18 84.45 238 46.27 2e-43 POPTRDRAFT_572441 homeobox leucine zipper family protein
blastp_kegg lcl|vvi:100241028 73 275 + 203 Gaps:24 98.44 192 48.68 8e-43 homeobox-leucine zipper protein ATHB-12-like
blastp_kegg lcl|mtr:MTR_8g026960 91 275 + 185 Gaps:16 83.40 241 46.77 1e-42 Homeobox-leucine zipper protein ATHB-7
blastp_kegg lcl|pop:POPTR_0002s17680g 91 275 + 185 Gaps:16 84.45 238 44.28 1e-42 POPTRDRAFT_799128 homeobox leucine zipper family protein
blastp_kegg lcl|mdm:103439396 73 275 + 203 Gaps:16 90.50 242 43.38 2e-42 homeobox-leucine zipper protein ATHB-12-like
blastp_uniprot_sprot sp|P46897|ATHB7_ARATH 69 273 + 205 Gaps:39 94.57 258 40.57 5e-38 Homeobox-leucine zipper protein ATHB-7 OS Arabidopsis thaliana GN ATHB-7 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M276|ATB12_ARATH 90 263 + 174 Gaps:26 77.45 235 46.15 3e-34 Homeobox-leucine zipper protein ATHB-12 OS Arabidopsis thaliana GN ATHB-12 PE 2 SV 1
blastp_uniprot_sprot sp|Q651Z5|HOX6_ORYSJ 89 210 + 122 none 49.00 249 47.54 5e-28 Homeobox-leucine zipper protein HOX6 OS Oryza sativa subsp. japonica GN HOX6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XH35|HOX6_ORYSI 89 210 + 122 none 49.00 249 47.54 5e-28 Homeobox-leucine zipper protein HOX6 OS Oryza sativa subsp. indica GN HOX6 PE 2 SV 2
blastp_uniprot_sprot sp|Q940J1|ATB16_ARATH 77 212 + 136 Gaps:3 45.24 294 43.61 5e-26 Homeobox-leucine zipper protein ATHB-16 OS Arabidopsis thaliana GN ATHB-16 PE 2 SV 2
blastp_uniprot_sprot sp|P46668|ATHB6_ARATH 76 218 + 143 Gaps:4 44.69 311 44.60 8e-25 Homeobox-leucine zipper protein ATHB-6 OS Arabidopsis thaliana GN ATHB-6 PE 1 SV 1
blastp_uniprot_sprot sp|P46667|ATHB5_ARATH 75 184 + 110 Gaps:5 33.65 312 52.38 6e-24 Homeobox-leucine zipper protein ATHB-5 OS Arabidopsis thaliana GN ATHB-5 PE 1 SV 1
blastp_uniprot_sprot sp|Q6Z248|HOX20_ORYSJ 89 194 + 106 none 39.41 269 45.28 7e-24 Homeobox-leucine zipper protein HOX20 OS Oryza sativa subsp. japonica GN HOX20 PE 2 SV 1
blastp_uniprot_sprot sp|A2YWC0|HOX20_ORYSI 89 194 + 106 none 39.41 269 45.28 7e-24 Homeobox-leucine zipper protein HOX20 OS Oryza sativa subsp. indica GN HOX20 PE 2 SV 1
blastp_uniprot_sprot sp|Q6K498|HOX4_ORYSJ 79 194 + 116 none 41.88 277 42.24 4e-23 Homeobox-leucine zipper protein HOX4 OS Oryza sativa subsp. japonica GN HOX4 PE 1 SV 1
rpsblast_cdd gnl|CDD|197696 84 140 + 57 none 100.00 57 40.35 4e-11 smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes.
rpsblast_cdd gnl|CDD|200956 89 140 + 52 none 91.23 57 44.23 2e-10 pfam00046 Homeobox Homeobox domain.
rpsblast_cdd gnl|CDD|28970 86 143 + 58 none 98.31 59 44.83 4e-09 cd00086 homeodomain Homeodomain DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes may bind to DNA as monomers or as homo- and/or heterodimers in a sequence-specific manner..
rpsblast_cdd gnl|CDD|202143 142 186 + 45 none 100.00 45 40.00 1e-07 pfam02183 HALZ Homeobox associated leucine zipper.
rpsblast_kog gnl|CDD|35704 53 225 + 173 Gaps:11 81.82 198 37.65 1e-20 KOG0483 KOG0483 KOG0483 Transcription factor HEX contains HOX and HALZ domains [Transcription].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 84 146 63 SM00389 none Homeodomain IPR001356
Gene3D 89 149 61 G3DSA:1.10.10.60 none none IPR009057
PANTHER 69 184 116 PTHR24326:SF122 none none none
PANTHER 69 184 116 PTHR24326 none none none
ProSitePatterns 117 140 24 PS00027 none 'Homeobox' domain signature. IPR017970
Pfam 89 140 52 PF00046 none Homeobox domain IPR001356
SUPERFAMILY 76 144 69 SSF46689 none none IPR009057
ProSiteProfiles 82 142 61 PS50071 none 'Homeobox' domain profile. IPR001356
Pfam 142 185 44 PF02183 none Homeobox associated leucine zipper IPR003106
Coils 162 183 22 Coil none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting