Protein : Qrob_P0064810.2 Q. robur
Protein Identifier  ? Qrob_P0064810.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR11064:SF27 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED (PTHR11064:SF27) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 197  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_030438 1 196 + 196 Gaps:18 86.11 216 78.49 1e-88 Nuclear transcription factor Y subunit B-3
blastp_kegg lcl|pop:POPTR_0016s00780g 1 195 + 195 Gaps:29 99.49 197 77.55 3e-87 POPTRDRAFT_254658 hypothetical protein
blastp_kegg lcl|vvi:100251431 1 196 + 196 Gaps:16 100.00 210 67.14 3e-86 nuclear transcription factor Y subunit B-3-like
blastp_kegg lcl|cam:101513559 1 185 + 185 Gaps:30 82.99 194 80.75 4e-75 nuclear transcription factor Y subunit B-2-like
blastp_kegg lcl|vvi:100261380 1 125 + 125 Gaps:6 51.84 245 89.76 9e-75 nuclear transcription factor Y subunit B-3-like
blastp_kegg lcl|mtr:MTR_5g095740 1 195 + 195 Gaps:24 97.86 187 69.95 1e-73 Nuclear transcription factor Y subunit B-3
blastp_kegg lcl|pvu:PHAVU_008G278900g 1 184 + 184 Gaps:39 83.96 187 78.34 1e-73 hypothetical protein
blastp_kegg lcl|pda:103704218 1 116 + 116 Gaps:7 54.67 225 88.62 4e-73 nuclear transcription factor Y subunit B-3-like
blastp_kegg lcl|pmum:103329260 1 185 + 185 Gaps:20 71.66 247 77.40 4e-73 nuclear transcription factor Y subunit B-3-like
blastp_kegg lcl|pop:POPTR_0001s37620g 1 149 + 149 Gaps:8 90.42 167 77.48 7e-73 POPTRDRAFT_1070047 hypothetical protein
blastp_pdb 1n1j_A 17 109 + 93 none 100.00 93 74.19 2e-46 mol:protein length:93 NF-YB
blastp_pdb 1jfi_B 22 127 + 106 Gaps:8 54.75 179 34.69 1e-13 mol:protein length:179 Transcription Regulator NC2 beta chain
blastp_pdb 2bym_D 19 108 + 90 none 70.31 128 35.56 2e-10 mol:protein length:128 CHRAC-14
blastp_pdb 2bym_B 19 108 + 90 none 70.31 128 35.56 2e-10 mol:protein length:128 CHRAC-14
blastp_pdb 2byk_D 19 108 + 90 none 70.31 128 35.56 2e-10 mol:protein length:128 CHRAC-14
blastp_pdb 2byk_B 19 108 + 90 none 70.31 128 35.56 2e-10 mol:protein length:128 CHRAC-14
blastp_uniprot_sprot sp|O23310|NFYB3_ARATH 1 125 + 125 Gaps:3 77.02 161 87.10 5e-72 Nuclear transcription factor Y subunit B-3 OS Arabidopsis thaliana GN NFYB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FGJ3|NFYB2_ARATH 1 123 + 123 Gaps:10 66.84 190 81.89 3e-64 Nuclear transcription factor Y subunit B-2 OS Arabidopsis thaliana GN NFYB2 PE 2 SV 1
blastp_uniprot_sprot sp|P25209|NFYB_MAIZE 19 181 + 163 Gaps:16 82.12 179 65.99 2e-60 Nuclear transcription factor Y subunit B OS Zea mays GN NFY2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VYK4|NFYB8_ARATH 9 129 + 121 none 69.94 173 71.90 4e-60 Nuclear transcription factor Y subunit B-8 OS Arabidopsis thaliana GN NFYB8 PE 2 SV 1
blastp_uniprot_sprot sp|Q60EQ4|NFYB3_ORYSJ 19 121 + 103 none 55.68 185 82.52 2e-59 Nuclear transcription factor Y subunit B-3 OS Oryza sativa subsp. japonica GN NFYB3 PE 1 SV 2
blastp_uniprot_sprot sp|Q67XJ2|NFYBA_ARATH 11 129 + 119 none 67.61 176 69.75 1e-57 Nuclear transcription factor Y subunit B-10 OS Arabidopsis thaliana GN NFYB10 PE 2 SV 1
blastp_uniprot_sprot sp|Q5QMG3|NFYB2_ORYSJ 1 131 + 131 none 73.60 178 65.65 1e-55 Nuclear transcription factor Y subunit B-2 OS Oryza sativa subsp. japonica GN NFYB2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SLG0|NFYB1_ARATH 1 131 + 131 Gaps:2 92.91 141 66.41 5e-55 Nuclear transcription factor Y subunit B-1 OS Arabidopsis thaliana GN NFYB1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SIT9|NFYB7_ARATH 19 114 + 96 none 44.65 215 81.25 8e-54 Nuclear transcription factor Y subunit B-7 OS Arabidopsis thaliana GN NFYB7 PE 2 SV 1
blastp_uniprot_sprot sp|Q6RG77|NFYB_HORSE 3 166 + 164 Gaps:5 77.78 207 54.66 8e-50 Nuclear transcription factor Y subunit beta OS Equus caballus GN NFYB PE 2 SV 1
rpsblast_cdd gnl|CDD|201453 23 88 + 66 Gaps:1 100.00 65 52.31 5e-24 pfam00808 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone. This family includes archaebacterial histones and histone like transcription factors from eukaryotes.
rpsblast_cdd gnl|CDD|32219 19 98 + 80 Gaps:2 85.71 91 35.90 1e-15 COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics].
rpsblast_cdd gnl|CDD|34751 8 116 + 109 Gaps:7 68.92 148 28.43 9e-13 COG5150 COG5150 Class 2 transcription repressor NC2 beta subunit (Dr1) [Transcription].
rpsblast_kog gnl|CDD|36087 1 146 + 146 Gaps:8 91.67 168 66.88 2e-51 KOG0869 KOG0869 KOG0869 CCAAT-binding factor subunit A (HAP3) [Transcription].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 3 193 191 PTHR11064:SF27 none none none
Gene3D 13 118 106 G3DSA:1.10.20.10 none none IPR009072
Gene3D 151 172 22 G3DSA:1.10.20.10 none none IPR009072
ProSitePatterns 55 71 17 PS00685 none NF-YB/HAP3 subunit signature. IPR003956
Pfam 24 88 65 PF00808 none Histone-like transcription factor (CBF/NF-Y) and archaeal histone IPR003958
PRINTS 71 89 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
PRINTS 52 70 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
PRINTS 90 108 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
PANTHER 3 193 191 PTHR11064 none none none
SUPERFAMILY 21 118 98 SSF47113 none none IPR009072

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting