Protein : Qrob_P0004640.2 Q. robur
Protein Identifier  ? Qrob_P0004640.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=7) PTHR10071//PTHR10071:SF161 - TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR) // SUBFAMILY NOT NAMED (PTHR10071:SF161) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 357  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1023150 127 356 + 230 Gaps:43 96.10 205 65.48 2e-64 GATA transcription factor putative
blastp_kegg lcl|csv:101221096 135 356 + 222 Gaps:33 74.22 287 60.09 2e-63 GATA transcription factor 1-like
blastp_kegg lcl|cmo:103499483 135 356 + 222 Gaps:31 73.96 288 58.22 4e-63 GATA transcription factor 1
blastp_kegg lcl|tcc:TCM_020437 127 356 + 230 Gaps:42 79.84 243 64.43 2e-62 GATA transcription factor 1 putative
blastp_kegg lcl|pop:POPTR_0001s14130g 127 356 + 230 Gaps:46 62.99 308 63.40 3e-57 POPTRDRAFT_814881 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10005658mg 127 356 + 230 Gaps:37 77.48 262 59.11 1e-54 hypothetical protein
blastp_kegg lcl|cit:102616168 127 356 + 230 Gaps:37 77.48 262 59.11 1e-54 GATA transcription factor 1-like
blastp_kegg lcl|eus:EUTSA_v10002609mg 128 339 + 212 Gaps:25 64.89 319 54.59 3e-54 hypothetical protein
blastp_kegg lcl|brp:103860012 127 347 + 221 Gaps:26 79.34 271 51.16 5e-54 GATA transcription factor 1
blastp_kegg lcl|crb:CARUB_v10014365mg 125 345 + 221 Gaps:31 95.15 227 54.63 1e-53 hypothetical protein
blastp_uniprot_sprot sp|Q8LAU9|GATA1_ARATH 130 347 + 218 Gaps:29 77.01 274 54.98 3e-52 GATA transcription factor 1 OS Arabidopsis thaliana GN GATA1 PE 2 SV 2
blastp_uniprot_sprot sp|Q6DBP8|GAT11_ARATH 163 356 + 194 Gaps:23 60.40 303 47.54 2e-35 GATA transcription factor 11 OS Arabidopsis thaliana GN GATA11 PE 2 SV 1
blastp_uniprot_sprot sp|O82632|GATA9_ARATH 272 342 + 71 none 23.05 308 80.28 2e-35 GATA transcription factor 9 OS Arabidopsis thaliana GN GATA9 PE 2 SV 1
blastp_uniprot_sprot sp|O49743|GATA4_ARATH 272 340 + 69 none 28.75 240 81.16 4e-34 GATA transcription factor 4 OS Arabidopsis thaliana GN GATA4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FH57|GATA5_ARATH 273 352 + 80 Gaps:4 24.78 339 69.05 5e-34 GATA transcription factor 5 OS Arabidopsis thaliana GN GATA5 PE 2 SV 1
blastp_uniprot_sprot sp|O49741|GATA2_ARATH 235 340 + 106 Gaps:3 40.53 264 60.75 1e-33 GATA transcription factor 2 OS Arabidopsis thaliana GN GATA2 PE 2 SV 1
blastp_uniprot_sprot sp|P69781|GAT12_ARATH 273 342 + 70 none 21.15 331 77.14 3e-33 GATA transcription factor 12 OS Arabidopsis thaliana GN GATA12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SD38|GATA6_ARATH 273 353 + 81 Gaps:5 27.56 312 66.28 4e-33 GATA transcription factor 6 OS Arabidopsis thaliana GN GATA6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SV30|GATA8_ARATH 273 340 + 68 none 21.12 322 75.00 5e-32 GATA transcription factor 8 OS Arabidopsis thaliana GN GATA8 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L4M6|GATA3_ARATH 267 347 + 81 none 30.11 269 64.20 6e-32 GATA transcription factor 3 OS Arabidopsis thaliana GN GATA3 PE 2 SV 2
rpsblast_cdd gnl|CDD|109380 275 310 + 36 none 100.00 36 55.56 4e-11 pfam00320 GATA GATA zinc finger. This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain.
rpsblast_cdd gnl|CDD|197702 271 323 + 53 Gaps:2 98.08 52 49.02 1e-10 smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
rpsblast_cdd gnl|CDD|29259 274 330 + 57 Gaps:3 100.00 54 40.74 4e-09 cd00202 ZnF_GATA Zinc finger DNA binding domain binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements a subset of family members may also bind protein zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 267 342 76 PTHR10071 none none none
Gene3D 273 307 35 G3DSA:3.30.50.10 none none IPR013088
SUPERFAMILY 268 331 64 SSF57716 none none none
SMART 269 319 51 SM00401 none zinc finger binding to DNA consensus sequence [AT]GATA[AG] IPR000679
ProSiteProfiles 269 305 37 PS50114 none GATA-type zinc finger domain profile. IPR000679
ProSitePatterns 275 300 26 PS00344 none GATA-type zinc finger domain. IPR000679
PANTHER 1 33 33 PTHR10071:SF161 none none none
PANTHER 267 342 76 PTHR10071:SF161 none none none
PANTHER 1 33 33 PTHR10071 none none none
Pfam 275 309 35 PF00320 none GATA zinc finger IPR000679

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting