Protein : Qrob_P0080370.2 Q. robur
Protein Identifier  ? Qrob_P0080370.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0483//KOG0842 - Transcription factor HEX contains HOX and HALZ domains [Transcription]. // Transcription factor tinman/NKX2-3 contains HOX domain [Transcription]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 294  
Kegg Orthology  K09338
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0003s07760g 1 293 + 293 Gaps:13 99.67 305 82.89 3e-169 POPTRDRAFT_799722 homeobox-leucine zipper family protein
blastp_kegg lcl|tcc:TCM_015919 1 293 + 293 Gaps:11 100.00 300 82.67 1e-168 Homeobox-leucine zipper protein 4 / HD-ZIP protein
blastp_kegg lcl|pop:POPTR_0001s15490g 1 293 + 293 Gaps:11 100.00 302 80.46 3e-165 homeobox-leucine zipper family protein
blastp_kegg lcl|vvi:100246436 1 293 + 293 Gaps:14 100.00 297 82.83 2e-162 homeobox-leucine zipper protein HAT4-like
blastp_kegg lcl|cit:102617860 2 293 + 292 Gaps:11 100.00 299 81.61 4e-155 homeobox-leucine zipper protein HAT4-like
blastp_kegg lcl|pmum:103337058 1 293 + 293 Gaps:28 100.00 311 79.42 1e-154 homeobox-leucine zipper protein HAT4
blastp_kegg lcl|cic:CICLE_v10021374mg 2 293 + 292 Gaps:11 100.00 299 81.27 1e-154 hypothetical protein
blastp_kegg lcl|pxb:103942427 1 293 + 293 Gaps:22 100.00 311 77.81 3e-154 homeobox-leucine zipper protein HAT4-like
blastp_kegg lcl|pxb:103934117 1 293 + 293 Gaps:22 100.00 311 77.81 3e-154 homeobox-leucine zipper protein HAT4-like
blastp_kegg lcl|pxb:103958388 1 293 + 293 Gaps:22 100.00 311 75.56 4e-154 homeobox-leucine zipper protein HAT4
blastp_pdb 2e1o_A 131 183 + 53 none 75.71 70 45.28 4e-07 mol:protein length:70 Homeobox protein PRH
blastp_pdb 1akh_A 140 183 + 44 none 72.13 61 50.00 1e-06 mol:protein length:61 PROTEIN (MATING-TYPE PROTEIN A-1)
blastp_pdb 1le8_A 140 183 + 44 none 83.02 53 47.73 4e-06 mol:protein length:53 MATING-TYPE PROTEIN A-1
blastp_pdb 1yrn_A 140 183 + 44 none 72.13 61 47.73 4e-06 mol:protein length:61 PROTEIN (MAT A1 HOMEODOMAIN)
blastp_pdb 1f43_A 140 183 + 44 none 72.13 61 47.73 4e-06 mol:protein length:61 MATING-TYPE PROTEIN A-1
blastp_pdb 2r5z_A 124 183 + 60 none 68.18 88 35.00 9e-06 mol:protein length:88 Homeotic protein Sex combs reduced
blastp_pdb 2r5y_A 124 183 + 60 none 68.18 88 35.00 9e-06 mol:protein length:88 Homeotic protein Sex combs reduced
blastp_uniprot_sprot sp|P46601|HAT2_ARATH 1 293 + 293 Gaps:38 100.00 283 66.08 4e-111 Homeobox-leucine zipper protein HAT2 OS Arabidopsis thaliana GN HAT2 PE 2 SV 2
blastp_uniprot_sprot sp|Q05466|HAT4_ARATH 1 293 + 293 Gaps:17 100.00 284 67.61 2e-110 Homeobox-leucine zipper protein HAT4 OS Arabidopsis thaliana GN HAT4 PE 1 SV 1
blastp_uniprot_sprot sp|P46600|HAT1_ARATH 1 293 + 293 Gaps:37 100.00 282 65.60 4e-106 Homeobox-leucine zipper protein HAT1 OS Arabidopsis thaliana GN HAT1 PE 2 SV 1
blastp_uniprot_sprot sp|P46602|HAT3_ARATH 42 277 + 236 Gaps:30 78.73 315 68.15 5e-93 Homeobox-leucine zipper protein HAT3 OS Arabidopsis thaliana GN HAT3 PE 2 SV 2
blastp_uniprot_sprot sp|P92953|ATHB4_ARATH 2 243 + 242 Gaps:34 86.79 318 57.61 3e-81 Homeobox-leucine zipper protein ATHB-4 OS Arabidopsis thaliana GN ATHB-4 PE 2 SV 1
blastp_uniprot_sprot sp|P46665|HAT14_ARATH 85 272 + 188 Gaps:13 58.04 336 63.08 3e-68 Homeobox-leucine zipper protein HAT14 OS Arabidopsis thaliana GN HAT14 PE 2 SV 3
blastp_uniprot_sprot sp|Q7XC54|HOX1_ORYSJ 64 278 + 215 Gaps:31 71.38 311 61.26 5e-68 Homeobox-leucine zipper protein HOX1 OS Oryza sativa subsp. japonica GN HOX1 PE 1 SV 1
blastp_uniprot_sprot sp|Q40691|HOX1_ORYSI 64 278 + 215 Gaps:31 71.38 311 61.26 5e-68 Homeobox-leucine zipper protein HOX1 OS Oryza sativa subsp. indica GN HOX1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6YPD0|HOX27_ORYSJ 54 243 + 190 Gaps:26 58.76 354 62.02 7e-68 Homeobox-leucine zipper protein HOX27 OS Oryza sativa subsp. japonica GN HOX27 PE 2 SV 1
blastp_uniprot_sprot sp|A2YW03|HOX27_ORYSI 54 243 + 190 Gaps:26 58.76 354 62.02 9e-68 Homeobox-leucine zipper protein HOX27 OS Oryza sativa subsp. indica GN HOX27 PE 2 SV 2
rpsblast_cdd gnl|CDD|113391 1 104 + 104 Gaps:8 99.10 111 58.18 2e-26 pfam04618 HD-ZIP_N HD-ZIP protein N terminus. This family consists of the N termini of plant homeobox-leucine zipper proteins. Its function is unknown.
rpsblast_cdd gnl|CDD|128634 185 228 + 44 none 100.00 44 86.36 6e-19 smart00340 HALZ homeobox associated leucin zipper.
rpsblast_cdd gnl|CDD|202143 185 228 + 44 none 97.78 45 50.00 2e-13 pfam02183 HALZ Homeobox associated leucine zipper.

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 121 186 66 SSF46689 none none IPR009057
Pfam 1 104 104 PF04618 none HD-ZIP protein N terminus IPR006712
Pfam 129 183 55 PF00046 none Homeobox domain IPR001356
PANTHER 115 275 161 PTHR24326 none none none
SMART 185 228 44 SM00340 none homeobox associated leucin zipper IPR003106
PANTHER 115 275 161 PTHR24326:SF140 none none none
SMART 127 189 63 SM00389 none Homeodomain IPR001356
PRINTS 156 165 10 PR00031 none Lambda-repressor HTH signature IPR000047
PRINTS 165 181 17 PR00031 none Lambda-repressor HTH signature IPR000047
ProSitePatterns 160 183 24 PS00027 none 'Homeobox' domain signature. IPR017970
ProSiteProfiles 125 185 61 PS50071 none 'Homeobox' domain profile. IPR001356
Gene3D 129 183 55 G3DSA:1.10.10.60 none none IPR009057
Coils 184 222 39 Coil none none none
Pfam 185 228 44 PF02183 none Homeobox associated leucine zipper IPR003106

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting