Protein : Qrob_P0064840.2 Q. robur
Protein Identifier  ? Qrob_P0064840.2 Organism . Name  Quercus robur
Score  74.9 Score Type  egn
Protein Description  (M=3) PTHR11064:SF20 - CG12310-PA (RE02926P) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 224  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100855401 1 223 + 223 Gaps:12 100.00 211 76.78 1e-109 nuclear transcription factor Y subunit B-6-like
blastp_kegg lcl|tcc:TCM_030446 1 223 + 223 Gaps:30 100.00 231 74.46 8e-101 Nuclear transcription factor Y subunit B-6
blastp_kegg lcl|fve:101292879 1 208 + 208 Gaps:12 87.18 234 75.00 1e-100 nuclear transcription factor Y subunit B-6-like
blastp_kegg lcl|gmx:100800011 1 200 + 200 Gaps:17 86.28 226 77.44 1e-98 LEC1-B nuclear transcription factor Y subunit B-6-like
blastp_kegg lcl|gmx:100194424 1 200 + 200 Gaps:12 89.69 223 73.00 5e-98 LEC1-A transcription factor LEC1-A
blastp_kegg lcl|pvu:PHAVU_003G087000g 1 194 + 194 Gaps:10 88.89 216 71.35 9e-91 hypothetical protein
blastp_kegg lcl|cam:101496026 4 188 + 185 Gaps:19 76.23 244 74.73 4e-89 nuclear transcription factor Y subunit B-6-like
blastp_kegg lcl|fve:101290939 1 219 + 219 Gaps:29 96.92 227 67.73 1e-88 nuclear transcription factor Y subunit B-6-like
blastp_kegg lcl|pxb:103957446 4 188 + 185 Gaps:46 79.65 285 64.76 1e-84 nuclear transcription factor Y subunit B-3-like
blastp_kegg lcl|pop:POPTR_0006s00690g 45 223 + 179 Gaps:22 88.36 189 79.04 9e-84 POPTRDRAFT_417536 hypothetical protein
blastp_pdb 1n1j_A 50 142 + 93 none 100.00 93 63.44 3e-39 mol:protein length:93 NF-YB
blastp_pdb 1jfi_B 55 156 + 102 Gaps:3 57.54 179 33.98 4e-13 mol:protein length:179 Transcription Regulator NC2 beta chain
blastp_pdb 2bym_D 52 141 + 90 none 70.31 128 31.11 3e-08 mol:protein length:128 CHRAC-14
blastp_pdb 2bym_B 52 141 + 90 none 70.31 128 31.11 3e-08 mol:protein length:128 CHRAC-14
blastp_pdb 2byk_D 52 141 + 90 none 70.31 128 31.11 3e-08 mol:protein length:128 CHRAC-14
blastp_pdb 2byk_B 52 141 + 90 none 70.31 128 31.11 3e-08 mol:protein length:128 CHRAC-14
blastp_uniprot_sprot sp|Q84W66|NFYB6_ARATH 1 184 + 184 Gaps:24 82.91 234 64.43 6e-76 Nuclear transcription factor Y subunit B-6 OS Arabidopsis thaliana GN NFYB6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SFD8|NFYB9_ARATH 1 198 + 198 Gaps:18 81.51 238 55.67 9e-63 Nuclear transcription factor Y subunit B-9 OS Arabidopsis thaliana GN NFYB9 PE 1 SV 2
blastp_uniprot_sprot sp|P25209|NFYB_MAIZE 51 192 + 142 Gaps:7 76.54 179 58.39 2e-49 Nuclear transcription factor Y subunit B OS Zea mays GN NFY2 PE 2 SV 1
blastp_uniprot_sprot sp|O23310|NFYB3_ARATH 45 152 + 108 none 67.08 161 64.81 2e-48 Nuclear transcription factor Y subunit B-3 OS Arabidopsis thaliana GN NFYB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SLG0|NFYB1_ARATH 50 167 + 118 Gaps:7 80.14 141 63.72 5e-48 Nuclear transcription factor Y subunit B-1 OS Arabidopsis thaliana GN NFYB1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FGJ3|NFYB2_ARATH 52 164 + 113 Gaps:5 56.84 190 66.67 7e-47 Nuclear transcription factor Y subunit B-2 OS Arabidopsis thaliana GN NFYB2 PE 2 SV 1
blastp_uniprot_sprot sp|Q67XJ2|NFYBA_ARATH 51 201 + 151 Gaps:9 84.09 176 54.73 1e-46 Nuclear transcription factor Y subunit B-10 OS Arabidopsis thaliana GN NFYB10 PE 2 SV 1
blastp_uniprot_sprot sp|Q60EQ4|NFYB3_ORYSJ 51 146 + 96 none 51.89 185 69.79 1e-46 Nuclear transcription factor Y subunit B-3 OS Oryza sativa subsp. japonica GN NFYB3 PE 1 SV 2
blastp_uniprot_sprot sp|Q8VYK4|NFYB8_ARATH 51 158 + 108 Gaps:2 63.58 173 63.64 4e-46 Nuclear transcription factor Y subunit B-8 OS Arabidopsis thaliana GN NFYB8 PE 2 SV 1
blastp_uniprot_sprot sp|Q5QMG3|NFYB2_ORYSJ 51 156 + 106 Gaps:8 64.04 178 56.14 1e-42 Nuclear transcription factor Y subunit B-2 OS Oryza sativa subsp. japonica GN NFYB2 PE 2 SV 1
rpsblast_cdd gnl|CDD|201453 56 121 + 66 Gaps:1 100.00 65 52.31 2e-21 pfam00808 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone. This family includes archaebacterial histones and histone like transcription factors from eukaryotes.
rpsblast_cdd gnl|CDD|32219 52 131 + 80 Gaps:2 85.71 91 38.46 1e-14 COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics].
rpsblast_cdd gnl|CDD|34751 58 149 + 92 none 62.16 148 31.52 2e-12 COG5150 COG5150 Class 2 transcription repressor NC2 beta subunit (Dr1) [Transcription].
rpsblast_kog gnl|CDD|36087 29 164 + 136 Gaps:3 82.74 168 53.96 8e-52 KOG0869 KOG0869 KOG0869 CCAAT-binding factor subunit A (HAP3) [Transcription].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 123 141 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
PRINTS 104 122 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
PRINTS 85 103 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
PANTHER 41 156 116 PTHR11064:SF20 none none none
Pfam 57 121 65 PF00808 none Histone-like transcription factor (CBF/NF-Y) and archaeal histone IPR003958
ProSitePatterns 88 104 17 PS00685 none NF-YB/HAP3 subunit signature. IPR003956
PANTHER 41 156 116 PTHR11064 none none none
Gene3D 45 153 109 G3DSA:1.10.20.10 none none IPR009072
SUPERFAMILY 54 151 98 SSF47113 none none IPR009072

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting