Protein : Qrob_P0102050.2 Q. robur
Protein Identifier  ? Qrob_P0102050.2 Organism . Name  Quercus robur
Score  58.1 Score Type  egn
Protein Description  (M=7) PTHR10071//PTHR10071:SF161 - TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR) // SUBFAMILY NOT NAMED (PTHR10071:SF161) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 341  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0045893 positive regulation of transcription, DNA-templated Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa007936mg 1 340 + 340 Gaps:11 100.00 351 74.07 8e-170 hypothetical protein
blastp_kegg lcl|pmum:103332364 1 340 + 340 Gaps:11 100.00 351 73.79 4e-169 GATA transcription factor 8
blastp_kegg lcl|pop:POPTR_0010s23010g 6 340 + 335 Gaps:31 97.16 352 73.68 5e-163 POPTRDRAFT_822568 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10032018mg 1 340 + 340 Gaps:11 100.00 341 77.13 5e-163 hypothetical protein
blastp_kegg lcl|cit:102625190 1 340 + 340 Gaps:11 100.00 341 77.13 5e-163 GATA transcription factor 8-like
blastp_kegg lcl|tcc:TCM_043158 1 340 + 340 Gaps:13 82.37 414 78.30 7e-163 Plant-specific GATA-type zinc finger transcription factor family protein isoform 1
blastp_kegg lcl|rcu:RCOM_0022220 1 340 + 340 Gaps:25 100.00 359 75.77 1e-160 GATA transcription factor putative
blastp_kegg lcl|pxb:103936644 1 340 + 340 Gaps:13 99.15 354 71.51 1e-159 GATA transcription factor 8-like
blastp_kegg lcl|pop:POPTR_0008s03880g 5 340 + 336 Gaps:31 97.46 354 75.65 9e-156 POPTRDRAFT_563735 zinc finger family protein
blastp_kegg lcl|pxb:103937194 1 340 + 340 Gaps:13 100.00 351 69.52 6e-154 GATA transcription factor 8-like
blastp_uniprot_sprot sp|Q9SV30|GATA8_ARATH 1 308 + 308 Gaps:55 91.61 322 46.78 7e-64 GATA transcription factor 8 OS Arabidopsis thaliana GN GATA8 PE 2 SV 1
blastp_uniprot_sprot sp|O82632|GATA9_ARATH 19 308 + 290 Gaps:52 79.22 308 46.31 3e-45 GATA transcription factor 9 OS Arabidopsis thaliana GN GATA9 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DBP8|GAT11_ARATH 13 312 + 300 Gaps:42 89.77 303 42.28 1e-39 GATA transcription factor 11 OS Arabidopsis thaliana GN GATA11 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FH57|GATA5_ARATH 71 330 + 260 Gaps:39 70.50 339 45.19 3e-38 GATA transcription factor 5 OS Arabidopsis thaliana GN GATA5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VZP4|GAT10_ARATH 10 311 + 302 Gaps:30 88.31 308 39.34 1e-37 GATA transcription factor 10 OS Arabidopsis thaliana GN GATA10 PE 2 SV 1
blastp_uniprot_sprot sp|P69781|GAT12_ARATH 70 308 + 239 Gaps:36 66.16 331 44.29 8e-37 GATA transcription factor 12 OS Arabidopsis thaliana GN GATA12 PE 2 SV 1
blastp_uniprot_sprot sp|O65515|GATA7_ARATH 76 306 + 231 Gaps:68 68.49 238 57.06 3e-36 GATA transcription factor 7 OS Arabidopsis thaliana GN GATA7 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LAU9|GATA1_ARATH 242 316 + 75 none 27.37 274 72.00 5e-31 GATA transcription factor 1 OS Arabidopsis thaliana GN GATA1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SD38|GATA6_ARATH 242 308 + 67 none 21.47 312 77.61 8e-31 GATA transcription factor 6 OS Arabidopsis thaliana GN GATA6 PE 2 SV 1
blastp_uniprot_sprot sp|O49743|GATA4_ARATH 241 319 + 79 none 32.92 240 64.56 1e-30 GATA transcription factor 4 OS Arabidopsis thaliana GN GATA4 PE 2 SV 1
rpsblast_cdd gnl|CDD|197702 240 292 + 53 Gaps:4 98.08 52 50.98 4e-12 smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
rpsblast_cdd gnl|CDD|109380 244 278 + 35 none 97.22 36 57.14 3e-11 pfam00320 GATA GATA zinc finger. This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain.
rpsblast_cdd gnl|CDD|29259 243 290 + 48 Gaps:3 83.33 54 44.44 4e-09 cd00202 ZnF_GATA Zinc finger DNA binding domain binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements a subset of family members may also bind protein zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 236 306 71 PTHR10071:SF161 none none none
Gene3D 242 275 34 G3DSA:3.30.50.10 none none IPR013088
PANTHER 236 306 71 PTHR10071 none none none
Pfam 244 277 34 PF00320 none GATA zinc finger IPR000679
SUPERFAMILY 242 301 60 SSF57716 none none none
ProSitePatterns 244 269 26 PS00344 none GATA-type zinc finger domain. IPR000679
ProSiteProfiles 238 274 37 PS50114 none GATA-type zinc finger domain profile. IPR000679
PIRSF 3 321 319 PIRSF016992 none none IPR016679
SMART 238 288 51 SM00401 none zinc finger binding to DNA consensus sequence [AT]GATA[AG] IPR000679

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting