Protein : Qrob_P0046890.2 Q. robur
Protein Identifier  ? Qrob_P0046890.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PF03789//PF05920 - ELK domain // Homeobox KN domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 164  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1510310 32 163 + 132 none 40.24 328 84.85 1e-69 homeobox protein knotted-1 putative
blastp_kegg lcl|pop:POPTR_0015s09040g 32 163 + 132 none 65.35 202 83.33 6e-68 hypothetical protein
blastp_kegg lcl|vvi:100243290 32 163 + 132 none 41.38 319 80.30 3e-67 homeobox protein knotted-1-like 6
blastp_kegg lcl|mdm:103455203 32 157 + 126 Gaps:1 36.39 349 78.74 2e-66 homeobox protein knotted-1-like 6
blastp_kegg lcl|tcc:TCM_012104 32 160 + 129 none 40.44 319 85.27 2e-65 KNOTTED1 homeobox gene 6
blastp_kegg lcl|pxb:103952995 32 158 + 127 Gaps:1 36.78 348 77.34 2e-64 homeobox protein knotted-1-like 6
blastp_kegg lcl|mdm:103437699 32 163 + 132 Gaps:1 37.89 351 81.20 1e-63 homeobox protein knotted-1-like 6
blastp_kegg lcl|mdm:103438123 32 160 + 129 Gaps:4 91.61 143 74.81 7e-62 homeobox protein knotted-1-like 4
blastp_kegg lcl|atr:s00085p00165180 17 162 + 146 none 44.38 329 71.23 2e-61 AMTR_s00085p00165180 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa019852mg 6 163 + 158 Gaps:15 86.84 190 64.24 6e-61 hypothetical protein
blastp_pdb 1x2n_A 81 139 + 59 none 80.82 73 47.46 2e-11 mol:protein length:73 Homeobox protein PKNOX1
blastp_pdb 2dmn_A 81 139 + 59 none 71.08 83 47.46 6e-10 mol:protein length:83 Homeobox protein TGIF2LX
blastp_pdb 3k2a_B 87 143 + 57 none 85.07 67 47.37 7e-10 mol:protein length:67 Homeobox protein Meis2
blastp_pdb 3k2a_A 87 143 + 57 none 85.07 67 47.37 7e-10 mol:protein length:67 Homeobox protein Meis2
blastp_pdb 1lfu_P 83 142 + 60 none 73.17 82 38.33 1e-07 mol:protein length:82 homeobox protein PBX1
blastp_pdb 2lk2_A 89 139 + 51 none 57.30 89 47.06 1e-07 mol:protein length:89 Homeobox protein TGIF1
blastp_pdb 2r5z_B 83 142 + 60 none 95.24 63 38.33 2e-07 mol:protein length:63 Homeobox protein extradenticle
blastp_pdb 2r5y_B 83 142 + 60 none 95.24 63 38.33 2e-07 mol:protein length:63 Homeobox protein extradenticle
blastp_pdb 1b8i_B 83 142 + 60 none 95.24 63 38.33 2e-07 mol:protein length:63 PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE)
blastp_pdb 1b72_B 83 142 + 60 none 68.97 87 38.33 2e-07 mol:protein length:87 PROTEIN (PBX1)
blastp_uniprot_sprot sp|Q84JS6|KNAT6_ARATH 37 160 + 124 Gaps:1 38.23 327 72.80 2e-53 Homeobox protein knotted-1-like 6 OS Arabidopsis thaliana GN KNAT6 PE 1 SV 1
blastp_uniprot_sprot sp|O04134|KNAP1_MALDO 16 156 + 141 Gaps:4 36.43 398 66.90 6e-49 Homeobox protein knotted-1-like 1 OS Malus domestica PE 2 SV 1
blastp_uniprot_sprot sp|P46640|KNAT2_ARATH 14 153 + 140 Gaps:10 48.39 310 62.00 2e-48 Homeobox protein knotted-1-like 2 OS Arabidopsis thaliana GN KNAT2 PE 1 SV 3
blastp_uniprot_sprot sp|P46639|KNAT1_ARATH 36 158 + 123 Gaps:3 31.66 398 73.02 2e-48 Homeobox protein knotted-1-like 1 OS Arabidopsis thaliana GN KNAT1 PE 1 SV 1
blastp_uniprot_sprot sp|O04135|KNAP2_MALDO 16 156 + 141 Gaps:4 36.52 397 66.21 2e-48 Homeobox protein knotted-1-like 2 OS Malus domestica PE 2 SV 1
blastp_uniprot_sprot sp|Q41330|KN1_SOLLC 36 156 + 121 Gaps:2 34.65 355 73.17 3e-48 Homeotic protein knotted-1 OS Solanum lycopersicum GN KN1 PE 2 SV 1
blastp_uniprot_sprot sp|Q43484|KNOX3_HORVU 20 158 + 139 Gaps:2 38.74 364 62.41 2e-45 Homeobox protein KNOX3 OS Hordeum vulgare GN KNOX3 PE 1 SV 1
blastp_uniprot_sprot sp|P46608|HSBH1_SOYBN 35 163 + 129 Gaps:4 32.98 379 68.00 2e-44 Homeobox protein SBH1 OS Glycine max GN H1 PE 2 SV 1
blastp_uniprot_sprot sp|P46609|KNOS6_ORYSJ 20 156 + 137 Gaps:2 38.50 361 62.59 3e-44 Homeobox protein knotted-1-like 6 OS Oryza sativa subsp. japonica GN OSH1 PE 2 SV 2
blastp_uniprot_sprot sp|O80416|KNOSC_ORYSJ 33 156 + 124 Gaps:2 35.49 355 66.67 6e-44 Homeobox protein knotted-1-like 12 OS Oryza sativa subsp. japonica GN OSH15 PE 2 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 100 139 40 PF05920 none Homeobox KN domain IPR008422
ProSiteProfiles 80 143 64 PS50071 none 'Homeobox' domain profile. IPR001356
Coils 47 68 22 Coil none none none
Gene3D 85 144 60 G3DSA:1.10.10.60 none none IPR009057
PANTHER 29 153 125 PTHR11850 none none none
SMART 82 147 66 SM00389 none Homeodomain IPR001356
Pfam 60 81 22 PF03789 none ELK domain IPR005539
PANTHER 29 153 125 PTHR11850:SF64 none none none
SUPERFAMILY 81 157 77 SSF46689 none none IPR009057
ProSitePatterns 118 141 24 PS00027 none 'Homeobox' domain signature. IPR017970
ProSiteProfiles 60 80 21 PS51213 none ELK domain profile. IPR005539

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting