6 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0003700 | sequence-specific DNA binding transcription factor activity | Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. |
GO:0006355 | regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
GO:0005634 | nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
GO:0043565 | sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
GO:0009737 | response to abscisic acid | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. |
GO:0045893 | positive regulation of transcription, DNA-templated | Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. |
24 Blast
14 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
PANTHER | 134 | 233 | 100 | PTHR22952:SF85 | none | none | IPR029803 |
PANTHER | 17 | 89 | 73 | PTHR22952:SF85 | none | none | IPR029803 |
PANTHER | 272 | 463 | 192 | PTHR22952:SF85 | none | none | IPR029803 |
Gene3D | 382 | 431 | 50 | G3DSA:1.20.5.170 | none | none | none |
Pfam | 382 | 430 | 49 | PF00170 | none | bZIP transcription factor | IPR004827 |
PANTHER | 134 | 233 | 100 | PTHR22952 | none | none | none |
PANTHER | 17 | 89 | 73 | PTHR22952 | none | none | none |
PANTHER | 272 | 463 | 192 | PTHR22952 | none | none | none |
SMART | 378 | 442 | 65 | SM00338 | none | basic region leucin zipper | IPR004827 |
ProSitePatterns | 385 | 400 | 16 | PS00036 | none | Basic-leucine zipper (bZIP) domain signature. | IPR004827 |
SUPERFAMILY | 382 | 426 | 45 | SSF57959 | none | none | none |
Coils | 398 | 440 | 43 | Coil | none | none | none |
Coils | 442 | 463 | 22 | Coil | none | none | none |
ProSiteProfiles | 380 | 432 | 53 | PS50217 | none | Basic-leucine zipper (bZIP) domain profile. | IPR004827 |
3 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran2_2015_nSeqBC_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,06 | 25,47 | 27,72 | lod | 3.6 | 7.1 |
Bourran2_2015_nEpis_A4 | Qrob_Chr09 | 9 | v_15847_485 | v_8329_369 | 34,94 | 34,88 | 37,45 | lod | 3.1 | 7 |
Bourran2_2015_nEpiBC_A4 | Qrob_Chr07 | 7 | s_1DP9TW_798 | v_8128_173 | 22,61 | 22,14 | 22,73 | lod | 3.1 | 8.5 |