Protein : Qrob_P0018160.2 Q. robur
Protein Identifier  ? Qrob_P0018160.2 Organism . Name  Quercus robur
Score  82.3 Score Type  egn
Protein Description  (M=1) PTHR10252//PTHR10252:SF25 - HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED // SUBFAMILY NOT NAMED Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 191  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103325121 1 184 + 184 Gaps:27 82.81 221 55.74 3e-30 transcriptional regulator ATRX homolog
blastp_kegg lcl|mdm:103422153 1 184 + 184 Gaps:30 82.88 222 44.02 7e-30 DNA polymerase epsilon subunit C
blastp_kegg lcl|pper:PRUPE_ppa018528mg 1 184 + 184 Gaps:27 82.81 221 53.55 2e-27 hypothetical protein
blastp_kegg lcl|pxb:103930629 115 184 + 70 none 31.53 222 60.00 3e-26 uncharacterized LOC103930629
blastp_kegg lcl|tcc:TCM_041051 22 184 + 163 Gaps:16 65.62 224 48.98 7e-26 Nuclear factor Y putative
blastp_kegg lcl|csv:101211039 1 184 + 184 Gaps:15 82.81 221 39.89 9e-26 uncharacterized LOC101211039
blastp_kegg lcl|cmo:103501940 1 184 + 184 Gaps:30 82.88 222 44.02 1e-25 DNA polymerase epsilon subunit C
blastp_kegg lcl|csv:101228076 1 184 + 184 Gaps:16 82.88 222 40.76 1e-25 uncharacterized LOC101228076
blastp_kegg lcl|cit:102609428 46 184 + 139 Gaps:10 62.93 205 45.74 2e-25 DNA polymerase epsilon subunit C-like
blastp_kegg lcl|cic:CICLE_v10030232mg 46 184 + 139 Gaps:10 62.93 205 45.74 2e-25 hypothetical protein
blastp_uniprot_sprot sp|Q9NR33|DPOE4_HUMAN 121 184 + 64 Gaps:2 54.70 117 34.38 4e-07 DNA polymerase epsilon subunit 4 OS Homo sapiens GN POLE4 PE 1 SV 2
blastp_uniprot_sprot sp|A6QQ14|DPOE4_BOVIN 121 184 + 64 Gaps:2 55.17 116 34.38 5e-07 DNA polymerase epsilon subunit 4 OS Bos taurus GN POLE4 PE 3 SV 1
rpsblast_cdd gnl|CDD|201453 125 184 + 60 none 92.31 65 26.67 2e-08 pfam00808 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone. This family includes archaebacterial histones and histone like transcription factors from eukaryotes.
rpsblast_kog gnl|CDD|36870 38 184 + 147 Gaps:16 55.51 236 22.90 9e-07 KOG1657 KOG1657 KOG1657 CCAAT-binding factor subunit C (HAP5) [Transcription].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 98 123 26 Coil none none none
SUPERFAMILY 80 184 105 SSF47113 none none IPR009072
Gene3D 126 184 59 G3DSA:1.10.20.10 none none IPR009072
Pfam 125 184 60 PF00808 none Histone-like transcription factor (CBF/NF-Y) and archaeal histone IPR003958
PANTHER 70 184 115 PTHR10252:SF25 none none none
PANTHER 70 184 115 PTHR10252 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting