Protein : Qrob_P0023260.2 Q. robur
Protein Identifier  ? Qrob_P0023260.2 Organism . Name  Quercus robur
Score  92.1 Score Type  egn
Protein Description  (M=8) K14431 - transcription factor TGA Gene Prediction Quality  validated
Protein length 

Sequence

Length: 235  
Kegg Orthology  K14431
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103407417 51 171 + 121 Gaps:3 59.33 209 74.19 4e-56 transcription factor TGA5-like
blastp_kegg lcl|cmo:103489525 51 171 + 121 Gaps:3 37.46 331 75.81 5e-56 transcription factor TGA2-like
blastp_kegg lcl|csv:101216885 51 171 + 121 Gaps:3 37.46 331 75.81 5e-56 transcription factor HBP-1b(c1)-like
blastp_kegg lcl|vvi:100242879 51 171 + 121 Gaps:3 26.44 469 75.81 2e-55 transcription factor HBP-1b(c1)-like
blastp_kegg lcl|fve:101298745 71 171 + 101 none 30.24 334 84.16 3e-55 transcription factor HBP-1b(c1)-like
blastp_kegg lcl|mdm:103438606 51 171 + 121 Gaps:3 37.24 333 74.19 8e-55 transcription factor TGA2-like
blastp_kegg lcl|pmum:103330791 51 171 + 121 Gaps:3 37.24 333 74.19 3e-54 transcription factor TGA2-like
blastp_kegg lcl|pxb:103952082 51 171 + 121 Gaps:3 37.24 333 73.39 3e-54 transcription factor TGA2-like
blastp_kegg lcl|pxb:103961870 51 171 + 121 Gaps:3 37.24 333 73.39 3e-54 transcription factor TGA2-like
blastp_kegg lcl|gmx:778190 51 171 + 121 Gaps:3 26.55 467 75.81 4e-54 BZIP99 bZIP transcription factor bZIP99
blastp_uniprot_sprot sp|Q39140|TGA6_ARATH 51 171 + 121 Gaps:3 37.58 330 66.94 3e-50 Transcription factor TGA6 OS Arabidopsis thaliana GN TGA6 PE 1 SV 2
blastp_uniprot_sprot sp|P43273|TGA2_ARATH 51 171 + 121 Gaps:3 37.58 330 66.13 4e-49 Transcription factor TGA2 OS Arabidopsis thaliana GN TGA2 PE 1 SV 1
blastp_uniprot_sprot sp|Q39163|TGA5_ARATH 51 171 + 121 Gaps:3 37.58 330 65.32 8e-49 Transcription factor TGA5 OS Arabidopsis thaliana GN TGA5 PE 1 SV 2
blastp_uniprot_sprot sp|P23923|HBP1B_WHEAT 61 171 + 111 Gaps:9 36.14 332 65.00 9e-49 Transcription factor HBP-1b(c38) OS Triticum aestivum PE 2 SV 1
blastp_uniprot_sprot sp|Q41558|HBP1C_WHEAT 51 171 + 121 Gaps:3 26.05 476 64.52 2e-47 Transcription factor HBP-1b(c1) (Fragment) OS Triticum aestivum PE 1 SV 2
blastp_uniprot_sprot sp|O24160|TGA21_TOBAC 71 171 + 101 Gaps:5 21.05 456 71.88 4e-44 TGACG-sequence-specific DNA-binding protein TGA-2.1 OS Nicotiana tabacum GN TGA21 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SX27|PAN_ARATH 70 171 + 102 Gaps:3 23.23 452 59.05 1e-37 Transcription factor PERIANTHIA OS Arabidopsis thaliana GN PAN PE 1 SV 1
blastp_uniprot_sprot sp|P14232|TGA1A_TOBAC 51 171 + 121 Gaps:7 35.65 359 50.78 2e-33 TGACG-sequence-specific DNA-binding protein TGA-1A OS Nicotiana tabacum GN TGA1A PE 1 SV 1
blastp_uniprot_sprot sp|Q39234|TGA3_ARATH 73 171 + 99 none 25.78 384 56.57 7e-32 Transcription factor TGA3 OS Arabidopsis thaliana GN TGA3 PE 1 SV 1
blastp_uniprot_sprot sp|Q93ZE2|TGA7_ARATH 73 171 + 99 none 26.90 368 56.57 2e-31 Transcription factor TGA7 OS Arabidopsis thaliana GN TGA7 PE 1 SV 1
rpsblast_cdd gnl|CDD|206313 98 171 + 74 none 93.67 79 77.03 2e-31 pfam14144 DOG1 Seed dormancy control. This family of plant proteins appears to be a highly specific controller seed dormancy.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 12 35 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 36 46 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 57 171 115 PTHR22952 none none none
Phobius 1 11 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 47 63 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 64 234 171 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Coils 93 114 22 Coil none none none
PANTHER 57 171 115 PTHR22952:SF94 none none none
Pfam 98 171 74 PF14144 none Seed dormancy control IPR025422

1 Localization

Analysis Start End Length
TMHMM 15 37 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 32   Secretory pathway 1 0.997 0.024 NON-PLANT 32