Protein : Qrob_P0098240.2 Q. robur
Protein Identifier  ? Qrob_P0098240.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0483//KOG0485//KOG0487//KOG0488//KOG0489//KOG0842//KOG0843//KOG0848//KOG0850 - Transcription factor HEX contains HOX and HALZ domains [Transcription]. // Transcription factor NKX-5.1/HMX1 contains HOX domain [Transcription]. // Transcription factor Abd-B contains HOX domain [Transcription]. // Transcription factor BarH and related HOX domain proteins [General function prediction only]. // Transcription factor zerknullt and related HOX domain proteins [General function prediction only]. // Transcription factor tinman/NKX2-3 contains HOX domain [Transcription]. // Transcription factor EMX1 and related HOX domain proteins [Transcription]. // Transcription factor Caudal contains HOX domain [Transcription]. // Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 330  
Kegg Orthology  K09338
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_013821 1 329 + 329 Gaps:7 100.00 332 76.51 9e-175 Homeobox protein putative isoform 1
blastp_kegg lcl|pop:POPTR_0015s07640g 1 329 + 329 Gaps:21 100.00 314 79.30 7e-172 POPTRDRAFT_807937 hypothetical protein
blastp_kegg lcl|vvi:100260419 1 329 + 329 Gaps:14 100.00 317 74.76 6e-167 homeobox-leucine zipper protein HAT5-like
blastp_kegg lcl|pper:PRUPE_ppa008495mg 1 329 + 329 Gaps:10 100.00 329 77.81 1e-166 hypothetical protein
blastp_kegg lcl|pmum:103338423 1 329 + 329 Gaps:10 100.00 329 77.81 5e-166 homeobox-leucine zipper protein HAT5-like
blastp_kegg lcl|pop:POPTR_0012s07270g 15 329 + 315 Gaps:14 96.85 317 76.87 2e-165 POPTRDRAFT_661900 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1513670 19 329 + 311 Gaps:14 94.98 319 76.57 5e-159 homeobox protein putative
blastp_kegg lcl|fve:101292119 2 329 + 328 Gaps:16 99.39 326 73.77 7e-159 homeobox-leucine zipper protein HAT5-like isoform 1
blastp_kegg lcl|pxb:103958760 21 329 + 309 Gaps:9 95.06 324 75.97 1e-153 homeobox-leucine zipper protein HAT5-like
blastp_kegg lcl|mdm:103428301 21 329 + 309 Gaps:9 95.06 324 75.32 1e-153 homeobox-leucine zipper protein HAT5-like
blastp_pdb 2e1o_A 95 145 + 51 none 72.86 70 52.94 9e-09 mol:protein length:70 Homeobox protein PRH
blastp_pdb 2r5z_A 92 148 + 57 Gaps:2 67.05 88 40.68 5e-07 mol:protein length:88 Homeotic protein Sex combs reduced
blastp_pdb 2r5y_A 92 148 + 57 Gaps:2 67.05 88 40.68 5e-07 mol:protein length:88 Homeotic protein Sex combs reduced
blastp_pdb 1san_A 104 151 + 48 none 77.42 62 43.75 6e-07 mol:protein length:62 ANTENNAPEDIA PROTEIN
blastp_pdb 1hom_A 104 151 + 48 none 70.59 68 43.75 8e-07 mol:protein length:68 ANTENNAPEDIA PROTEIN
blastp_pdb 2hoa_A 104 151 + 48 none 70.59 68 43.75 9e-07 mol:protein length:68 ANTENNAPEDIA PROTEIN
blastp_pdb 1ahd_P 104 151 + 48 none 70.59 68 43.75 9e-07 mol:protein length:68 Antennapedia Protein Mutant
blastp_pdb 9ant_B 91 147 + 57 Gaps:3 96.77 62 41.67 1e-06 mol:protein length:62 ANTENNAPEDIA HOMEODOMAIN
blastp_pdb 9ant_A 91 147 + 57 Gaps:3 96.77 62 41.67 1e-06 mol:protein length:62 ANTENNAPEDIA HOMEODOMAIN
blastp_pdb 2h1k_B 92 148 + 57 Gaps:2 93.65 63 38.98 8e-06 mol:protein length:63 Pancreatic and duodenal homeobox 1
blastp_uniprot_sprot sp|Q02283|HAT5_ARATH 49 258 + 210 Gaps:24 70.59 272 45.31 5e-40 Homeobox-leucine zipper protein HAT5 OS Arabidopsis thaliana GN HAT5 PE 1 SV 1
blastp_uniprot_sprot sp|Q6YWR4|HOX16_ORYSJ 1 194 + 194 Gaps:17 51.60 343 48.02 1e-37 Homeobox-leucine zipper protein HOX16 OS Oryza sativa subsp. japonica GN HOX16 PE 2 SV 1
blastp_uniprot_sprot sp|A2X980|HOX16_ORYSI 49 194 + 146 Gaps:7 40.29 345 53.24 5e-37 Homeobox-leucine zipper protein HOX16 OS Oryza sativa subsp. indica GN HOX16 PE 2 SV 1
blastp_uniprot_sprot sp|Q6Z248|HOX20_ORYSJ 91 188 + 98 none 36.43 269 63.27 2e-36 Homeobox-leucine zipper protein HOX20 OS Oryza sativa subsp. japonica GN HOX20 PE 2 SV 1
blastp_uniprot_sprot sp|A2YWC0|HOX20_ORYSI 91 188 + 98 none 36.43 269 63.27 2e-36 Homeobox-leucine zipper protein HOX20 OS Oryza sativa subsp. indica GN HOX20 PE 2 SV 1
blastp_uniprot_sprot sp|Q6ZA74|HOX5_ORYSJ 90 188 + 99 none 28.37 349 61.62 2e-36 Homeobox-leucine zipper protein HOX5 OS Oryza sativa subsp. japonica GN HOX5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XH36|HOX5_ORYSI 90 188 + 99 none 28.29 350 61.62 2e-36 Homeobox-leucine zipper protein HOX5 OS Oryza sativa subsp. indica GN HOX5 PE 1 SV 1
blastp_uniprot_sprot sp|Q6K498|HOX4_ORYSJ 91 188 + 98 none 35.38 277 64.29 3e-36 Homeobox-leucine zipper protein HOX4 OS Oryza sativa subsp. japonica GN HOX4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XH37|HOX4_ORYSI 91 188 + 98 none 35.38 277 64.29 3e-36 Homeobox-leucine zipper protein HOX4 OS Oryza sativa subsp. indica GN HOX4 PE 1 SV 1
blastp_uniprot_sprot sp|Q940J1|ATB16_ARATH 62 188 + 127 Gaps:4 44.56 294 51.91 2e-35 Homeobox-leucine zipper protein ATHB-16 OS Arabidopsis thaliana GN ATHB-16 PE 2 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 146 188 43 Coil none none none
SUPERFAMILY 78 149 72 SSF46689 none none IPR009057
Gene3D 98 146 49 G3DSA:1.10.10.60 none none IPR009057
ProSiteProfiles 87 147 61 PS50071 none 'Homeobox' domain profile. IPR001356
PANTHER 75 188 114 PTHR24326:SF171 none none none
ProSitePatterns 122 145 24 PS00027 none 'Homeobox' domain signature. IPR017970
Pfam 147 188 42 PF02183 none Homeobox associated leucine zipper IPR003106
SMART 90 151 62 SM00389 none Homeodomain IPR001356
PANTHER 75 188 114 PTHR24326 none none none
Pfam 92 145 54 PF00046 none Homeobox domain IPR001356
PRINTS 118 127 10 PR00031 none Lambda-repressor HTH signature IPR000047
PRINTS 127 143 17 PR00031 none Lambda-repressor HTH signature IPR000047

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting