Protein : Qrob_P0095830.2 Q. robur
Protein Identifier  ? Qrob_P0095830.2 Organism . Name  Quercus robur
Score  99.1 Score Type  egn
Protein Description  (M=41) PF03106 - WRKY DNA -binding domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 523  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_004951 1 522 + 522 Gaps:55 100.00 511 69.86 0.0 WRKY family transcription factor putative
blastp_kegg lcl|rcu:RCOM_1343180 37 522 + 486 Gaps:43 93.78 498 70.88 0.0 WRKY transcription factor putative
blastp_kegg lcl|cit:102631124 2 522 + 521 Gaps:56 99.60 501 67.33 0.0 probable WRKY transcription factor 47-like
blastp_kegg lcl|cic:CICLE_v10019820mg 2 522 + 521 Gaps:56 99.60 501 67.33 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0014s10750g 7 522 + 516 Gaps:55 88.75 560 68.61 0.0 POPTRDRAFT_572520 hypothetical protein
blastp_kegg lcl|pop:POPTR_0002s18770g 3 522 + 520 Gaps:37 99.80 506 63.56 0.0 POPTRDRAFT_552620 WRKY transcription factor 47 family protein
blastp_kegg lcl|vvi:100264000 6 522 + 517 Gaps:57 99.21 506 63.75 0.0 probable WRKY transcription factor 47-like
blastp_kegg lcl|gmx:100783661 1 522 + 522 Gaps:74 100.00 516 60.08 4e-166 probable WRKY transcription factor 47-like
blastp_kegg lcl|pmum:103327251 34 522 + 489 Gaps:103 90.58 616 56.09 4e-155 probable WRKY transcription factor 47
blastp_kegg lcl|pvu:PHAVU_001G218500g 1 522 + 522 Gaps:51 100.00 519 58.96 3e-152 hypothetical protein
blastp_pdb 2ayd_A 267 343 + 77 Gaps:1 100.00 76 50.00 2e-20 mol:protein length:76 WRKY transcription factor 1
blastp_pdb 2lex_A 271 341 + 71 Gaps:1 89.74 78 58.57 1e-19 mol:protein length:78 Probable WRKY transcription factor 4
blastp_pdb 1wj2_A 271 341 + 71 Gaps:1 89.74 78 58.57 1e-19 mol:protein length:78 Probable WRKY transcription factor 4
blastp_uniprot_sprot sp|Q9ZSI7|WRK47_ARATH 4 522 + 519 Gaps:129 98.98 489 50.00 5e-95 Probable WRKY transcription factor 47 OS Arabidopsis thaliana GN WRKY47 PE 2 SV 2
blastp_uniprot_sprot sp|Q9XEC3|WRK42_ARATH 9 486 + 478 Gaps:52 95.08 528 41.04 2e-90 Probable WRKY transcription factor 42 OS Arabidopsis thaliana GN WRKY42 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C519|WRKY6_ARATH 5 500 + 496 Gaps:74 90.42 553 42.00 5e-85 WRKY transcription factor 6 OS Arabidopsis thaliana GN WRKY6 PE 1 SV 1
blastp_uniprot_sprot sp|Q93WT0|WRK31_ARATH 36 486 + 451 Gaps:62 90.52 538 44.35 1e-77 Probable WRKY transcription factor 31 OS Arabidopsis thaliana GN WRKY31 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXG8|WRK72_ARATH 109 355 + 247 Gaps:50 48.72 548 40.45 2e-44 Probable WRKY transcription factor 72 OS Arabidopsis thaliana GN WRKY72 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C9F0|WRKY9_ARATH 265 362 + 98 none 26.20 374 73.47 8e-44 Probable WRKY transcription factor 9 OS Arabidopsis thaliana GN WRKY9 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VWV6|WRK61_ARATH 260 419 + 160 Gaps:11 35.21 480 55.62 1e-40 Probable WRKY transcription factor 61 OS Arabidopsis thaliana GN WRKY61 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAR4|WRK36_ARATH 109 403 + 295 Gaps:71 77.00 387 39.93 8e-40 Probable WRKY transcription factor 36 OS Arabidopsis thaliana GN WRKY36 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SAH7|WRK40_ARATH 210 483 + 274 Gaps:66 74.83 302 34.07 2e-24 Probable WRKY transcription factor 40 OS Arabidopsis thaliana GN WRKY40 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C5T4|WRK18_ARATH 264 359 + 96 Gaps:5 32.58 310 48.51 8e-23 WRKY transcription factor 18 OS Arabidopsis thaliana GN WRKY18 PE 1 SV 2
rpsblast_cdd gnl|CDD|197869 282 338 + 57 none 96.61 59 61.40 2e-28 smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants including pathogen defense senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T) which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
rpsblast_cdd gnl|CDD|145969 280 340 + 61 Gaps:1 100.00 60 61.67 1e-27 pfam03106 WRKY WRKY DNA -binding domain.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 275 341 67 PS50811 none WRKY domain profile. IPR003657
PANTHER 3 500 498 PTHR31429:SF4 none none none
PANTHER 3 500 498 PTHR31429 none none none
SUPERFAMILY 273 341 69 SSF118290 none none IPR003657
Gene3D 265 341 77 G3DSA:2.20.25.80 none none IPR003657
Pfam 281 339 59 PF03106 none WRKY DNA -binding domain IPR003657
SMART 280 340 61 SM00774 none DNA binding domain IPR003657

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting