30 Parents
| Identifier | Name | Description |
|---|---|---|
| GO:0005634 | nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| GO:0005622 | intracellular | The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. |
| GO:0016593 | Cdc73/Paf1 complex | A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p. |
| GO:0043234 | protein complex | A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical. |
| GO:0043231 | intracellular membrane-bounded organelle | Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. |
| GO:1902494 | catalytic complex | A protein complex which is capable of catalytic activity. |
| GO:0044424 | intracellular part | Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. |
| GO:0005623 | cell | The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. |
| GO:0032991 | macromolecular complex | A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which the constituent parts function together. |
| GO:0044464 | cell part | Any constituent part of a cell, the basic structural and functional unit of all organisms. |
| GO:0005575 | cellular_component | The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together. |
| GO:0044428 | nuclear part | Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. |
| GO:0044422 | organelle part | Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane. |
| GO:0044446 | intracellular organelle part | A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane. |
| GO:0043226 | organelle | Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane. |
| GO:0043227 | membrane-bounded organelle | Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. |
| GO:0043229 | intracellular organelle | Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. |
| GO:0044451 | nucleoplasm part | Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus. |
| GO:0043233 | organelle lumen | The internal volume enclosed by the membranes of a particular organelle; includes the volume enclosed by a single organelle membrane, e.g. endoplasmic reticulum lumen, or the volume enclosed by the innermost of the two lipid bilayers of an organelle envelope, e.g. nuclear lumen. |
| GO:0031981 | nuclear lumen | The volume enclosed by the nuclear inner membrane. |
| GO:0070013 | intracellular organelle lumen | An organelle lumen that is part of an intracellular organelle. |
| GO:0005654 | nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| GO:0031974 | membrane-enclosed lumen | The enclosed volume within a sealed membrane or between two sealed membranes. Encompasses the volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear envelope lumen. |
| GO:1990234 | transferase complex | A protein complex capable of catalyzing the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). |
| GO:0061695 | transferase complex, transferring phosphorus-containing groups | A transferase complex capable of catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). |
| GO:0000428 | DNA-directed RNA polymerase complex | A protein complex that possesses DNA-directed RNA polymerase activity. |
| GO:0030880 | RNA polymerase complex | Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits. |
| GO:0055029 | nuclear DNA-directed RNA polymerase complex | A protein complex, located in the nucleus, that possesses DNA-directed RNA polymerase activity. |
| GO:0016591 | DNA-directed RNA polymerase II, holoenzyme | Large protein complex composed of the RNA polymerase core complex and a variety of other proteins including transcription factor complexes TFIIA, D, E, F, and H which are required for promoter recognition, and the Mediator subcomplex. Catalyzes the synthesis of eukaryotic pre-mRNA. |
| GO:0008023 | transcription elongation factor complex | Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation. |
8 Protein
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0068110.2 | Quercus robur | 100.0 | egn | (M=1) K15175 - parafibromin | validated | ||
| Qrob_P0166680.2 | Quercus robur | 100.0 | egn | (M=2) K15177 - RNA polymerase-associated protein LEO1 | validated | ||
| Qrob_P0166710.2 | Quercus robur | 0.0 | egn | (M=2) K15177 - RNA polymerase-associated protein LEO1 | validated | ||
| Qrob_P0178680.2 | Quercus robur | 100.0 | egn | (M=1) K15174 - RNA polymerase II-associated factor 1 | validated | ||
| Qrob_P0189860.2 | Quercus robur | 100.0 | egn | (M=2) K15176 - RNA polymerase-associated protein CTR9 | validated | ||
| Qrob_P0189870.2 | Quercus robur | 100.0 | egn | (M=2) K15176 - RNA polymerase-associated protein CTR9 | validated | ||
| Qrob_P0287430.2 | Quercus robur | 100.0 | egn | (M=2) K15178 - RNA polymerase-associated protein RTF1 | validated | ||
| Qrob_P0340830.2 | Quercus robur | 100.0 | egn | (M=2) K15178 - RNA polymerase-associated protein RTF1 | validated |
38 Relations
| Relationship |
Parent Term . Identifier |
Child Term . Identifier |
|---|---|---|
| part of | GO:0016591 | GO:0016593 |
| is_a | GO:0008023 | GO:0016593 |
| part of | GO:0061695 | GO:0016593 |
| part of | GO:0031981 | GO:0016593 |
| part of | GO:1902494 | GO:0016593 |
| is_a | GO:0044422 | GO:0016593 |
| is_a | GO:0044446 | GO:0016593 |
| part of | GO:0005622 | GO:0016593 |
| part of | GO:0005623 | GO:0016593 |
| is_a | GO:0043234 | GO:0016593 |
| is_a | GO:0044424 | GO:0016593 |
| is_a | GO:0044464 | GO:0016593 |
| part of | GO:0044464 | GO:0016593 |
| is_a | GO:0044428 | GO:0016593 |
| part of | GO:0055029 | GO:0016593 |
| part of | GO:1990234 | GO:0016593 |
| part of | GO:0044446 | GO:0016593 |
| part of | GO:0031974 | GO:0016593 |
| part of | GO:0032991 | GO:0016593 |
| part of | GO:0044424 | GO:0016593 |
| part of | GO:0044422 | GO:0016593 |
| is_a | GO:0005575 | GO:0016593 |
| is_a | GO:0044451 | GO:0016593 |
| part of | GO:0044428 | GO:0016593 |
| part of | GO:0070013 | GO:0016593 |
| part of | GO:0005654 | GO:0016593 |
| part of | GO:0043231 | GO:0016593 |
| part of | GO:0043233 | GO:0016593 |
| part of | GO:0043234 | GO:0016593 |
| part of | GO:0005634 | GO:0016593 |
