Protein : Qrob_P0178680.2 Q. robur
Protein Identifier  ? Qrob_P0178680.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K15174 - RNA polymerase II-associated factor 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 552  
Kegg Orthology  K15174
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006368 transcription elongation from RNA polymerase II promoter The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
GO:0016570 histone modification The covalent alteration of one or more amino acid residues within a histone protein.
GO:0016593 Cdc73/Paf1 complex A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103327864 44 551 + 508 Gaps:5 77.05 658 78.90 0.0 bromodomain-containing protein 4
blastp_kegg lcl|pper:PRUPE_ppa002145mg 44 551 + 508 Gaps:5 71.51 709 78.90 0.0 hypothetical protein
blastp_kegg lcl|pmum:103322535 50 551 + 502 Gaps:5 73.25 684 78.84 0.0 RNA polymerase II-associated factor 1 homolog
blastp_kegg lcl|cmo:103500777 43 551 + 509 Gaps:28 73.62 705 75.53 0.0 RNA polymerase II-associated factor 1 homolog
blastp_kegg lcl|csv:101203806 43 551 + 509 Gaps:27 73.37 706 75.29 0.0 uncharacterized LOC101203806
blastp_kegg lcl|pper:PRUPE_ppa002485mg 50 551 + 502 Gaps:21 72.60 668 80.00 0.0 hypothetical protein
blastp_kegg lcl|mdm:103431080 44 551 + 508 Gaps:8 71.55 710 76.38 0.0 RNA polymerase II-associated factor 1 homolog
blastp_kegg lcl|tcc:TCM_028891 44 551 + 508 Gaps:10 73.28 685 75.90 0.0 Hydroxyproline-rich glycoprotein family protein isoform 1
blastp_kegg lcl|gmx:100800148 38 551 + 514 Gaps:9 77.85 659 74.07 0.0 RNA polymerase II-associated factor 1 homolog
blastp_kegg lcl|pxb:103944809 67 551 + 485 Gaps:8 68.31 710 78.97 0.0 RNA polymerase II-associated factor 1 homolog
blastp_uniprot_sprot sp|Q5RAX0|PAF1_PONAB 155 472 + 318 Gaps:42 58.91 533 32.17 2e-26 RNA polymerase II-associated factor 1 homolog OS Pongo abelii GN PAF1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8N7H5|PAF1_HUMAN 155 472 + 318 Gaps:42 59.13 531 32.17 2e-26 RNA polymerase II-associated factor 1 homolog OS Homo sapiens GN PAF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q2KJ14|PAF1_BOVIN 155 472 + 318 Gaps:42 59.02 532 32.17 3e-26 RNA polymerase II-associated factor 1 homolog OS Bos taurus GN PAF1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8K2T8|PAF1_MOUSE 155 472 + 318 Gaps:42 58.69 535 32.17 3e-26 RNA polymerase II-associated factor 1 homolog OS Mus musculus GN Paf1 PE 2 SV 1
blastp_uniprot_sprot sp|Q4V886|PAF1_RAT 155 472 + 318 Gaps:42 58.69 535 32.17 3e-26 RNA polymerase II-associated factor 1 homolog OS Rattus norvegicus GN Paf1 PE 2 SV 1
blastp_uniprot_sprot sp|Q4U0S5|PAF1_DANRE 130 472 + 343 Gaps:54 65.01 503 32.11 3e-26 RNA polymerase II-associated factor 1 homolog OS Danio rerio GN paf1 PE 1 SV 1
blastp_uniprot_sprot sp|A2BD83|PAF1_XENLA 158 472 + 315 Gaps:42 59.35 524 31.51 1e-24 RNA polymerase II-associated factor 1 homolog OS Xenopus laevis GN paf1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6P2Y1|PAF1_XENTR 155 472 + 318 Gaps:44 60.38 520 30.89 2e-24 RNA polymerase II-associated factor 1 homolog OS Xenopus tropicalis GN paf1 PE 2 SV 1
blastp_uniprot_sprot sp|P90783|PAF1_CAEEL 157 436 + 280 Gaps:46 64.47 425 28.47 1e-13 RNA polymerase II-associated factor 1 homolog OS Caenorhabditis elegans GN C55A6.9 PE 3 SV 2
rpsblast_cdd gnl|CDD|146557 155 551 + 397 Gaps:64 93.50 431 28.54 2e-58 pfam03985 Paf1 Paf1. Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i.
rpsblast_cdd gnl|CDD|148655 6 78 + 73 none 24.58 297 31.51 7e-07 pfam07174 FAP Fibronectin-attachment protein (FAP). This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline are approximately 300 long and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.
rpsblast_kog gnl|CDD|37689 2 478 + 477 Gaps:69 96.24 452 40.92 5e-37 KOG2478 KOG2478 KOG2478 Putative RNA polymerase II regulator [Transcription].
rpsblast_kog gnl|CDD|37135 3 66 + 64 Gaps:9 6.90 1102 55.26 3e-07 KOG1924 KOG1924 KOG1924 RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms Cytoskeleton].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 71 504 434 PTHR23188 none none IPR007133
PANTHER 71 504 434 PTHR23188:SF12 none none none
Coils 77 98 22 Coil none none none
Coils 297 325 29 Coil none none none
Pfam 156 547 392 PF03985 none Paf1 IPR007133

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting