Protein : Qrob_P0166680.2 Q. robur
Protein Identifier  ? Qrob_P0166680.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K15177 - RNA polymerase-associated protein LEO1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 629  
Kegg Orthology  K15177
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006368 transcription elongation from RNA polymerase II promoter The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
GO:0016570 histone modification The covalent alteration of one or more amino acid residues within a histone protein.
GO:0016593 Cdc73/Paf1 complex A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10019267mg 2 628 + 627 Gaps:15 99.69 638 77.99 0.0 hypothetical protein
blastp_kegg lcl|cit:102619104 2 628 + 627 Gaps:16 99.69 639 78.34 0.0 RNA polymerase-associated protein LEO1-like
blastp_kegg lcl|tcc:TCM_014228 1 628 + 628 Gaps:8 100.00 630 79.37 0.0 Leo1-like family protein isoform 1
blastp_kegg lcl|pmum:103338589 1 628 + 628 Gaps:12 100.00 618 79.77 0.0 RNA polymerase-associated protein LEO1
blastp_kegg lcl|pop:POPTR_0012s06710g 1 628 + 628 Gaps:22 100.00 620 77.42 0.0 POPTRDRAFT_569930 hypothetical protein
blastp_kegg lcl|vvi:100248444 1 628 + 628 Gaps:13 100.00 623 79.29 0.0 uncharacterized LOC100248444
blastp_kegg lcl|pxb:103931353 1 628 + 628 Gaps:23 100.00 613 75.37 0.0 RNA polymerase-associated protein LEO1-like
blastp_kegg lcl|mdm:103437873 1 628 + 628 Gaps:24 100.00 612 73.04 0.0 RNA polymerase-associated protein LEO1-like
blastp_kegg lcl|cmo:103490845 1 628 + 628 Gaps:21 100.00 623 77.85 0.0 RNA polymerase-associated protein LEO1
blastp_kegg lcl|mdm:103424559 1 628 + 628 Gaps:21 100.00 611 75.12 0.0 RNA polymerase-associated protein LEO1-like
blastp_uniprot_sprot sp|Q6NYV9|LEO1_DANRE 166 465 + 300 Gaps:43 38.94 696 35.79 1e-28 RNA polymerase-associated protein LEO1 OS Danio rerio GN leo1 PE 1 SV 1
blastp_uniprot_sprot sp|Q52KV5|LEO1_XENLA 240 467 + 228 Gaps:11 32.01 703 34.22 2e-27 RNA polymerase-associated protein LEO1 OS Xenopus laevis GN leo1 PE 2 SV 1
blastp_uniprot_sprot sp|Q641X2|LEO1_RAT 240 457 + 218 Gaps:10 31.56 678 34.11 2e-26 RNA polymerase-associated protein LEO1 OS Rattus norvegicus GN Leo1 PE 1 SV 1
blastp_uniprot_sprot sp|Q94546|ATU_DROME 240 425 + 186 Gaps:11 25.79 725 37.43 4e-24 Another transcription unit protein OS Drosophila melanogaster GN Atu PE 1 SV 2
blastp_uniprot_sprot sp|Q54MB8|LEO1_DICDI 253 474 + 222 Gaps:20 42.71 487 40.87 6e-24 RNA polymerase-associated protein LEO1 OS Dictyostelium discoideum GN leo1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9P6R2|YOH8_SCHPO 216 418 + 203 Gaps:37 48.02 429 30.10 1e-12 Uncharacterized protein C13E7.08c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC13E7.08c PE 3 SV 1
rpsblast_cdd gnl|CDD|112803 213 499 + 287 Gaps:20 90.06 312 35.94 6e-49 pfam04004 Leo1 Leo1-like protein. Members of this family are part of the Paf1/RNA polymerase II complex. The Paf1 complex probably functions during the elongation phase of transcription. The Leo1 subunit of the yeast Paf1-complex binds RNA and contributes to complex recruitment. The subunit acts by co-ordinating co-transcriptional chromain modifications and helping recruitment of mRNA 3prime-end processing factors.
rpsblast_cdd gnl|CDD|162113 15 245 + 231 Gaps:40 24.36 1096 21.72 4e-07 TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
rpsblast_kog gnl|CDD|37639 172 582 + 411 Gaps:48 84.20 443 34.85 3e-37 KOG2428 KOG2428 KOG2428 Uncharacterized conserved protein [Function unknown].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 256 418 163 PF04004 none Leo1-like protein IPR007149
Coils 416 437 22 Coil none none none
Coils 545 585 41 Coil none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting