Protein : Qrob_P0189870.2 Q. robur
Protein Identifier  ? Qrob_P0189870.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K15176 - RNA polymerase-associated protein CTR9 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 431  
Kegg Orthology  K15176
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0016570 histone modification The covalent alteration of one or more amino acid residues within a histone protein.
GO:0016593 Cdc73/Paf1 complex A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa015419mg 7 430 + 424 Gaps:4 42.47 1003 80.28 0.0 hypothetical protein
blastp_kegg lcl|pmum:103340571 7 430 + 424 Gaps:5 38.96 1091 80.71 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|pxb:103951927 7 430 + 424 Gaps:6 38.90 1090 77.36 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|cic:CICLE_v10007295mg 7 430 + 424 Gaps:6 38.79 1088 77.49 0.0 hypothetical protein
blastp_kegg lcl|cit:102612227 7 430 + 424 Gaps:6 38.79 1088 77.49 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|mdm:103418084 7 430 + 424 Gaps:6 38.90 1090 76.89 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|cmo:103492361 7 414 + 408 Gaps:7 38.16 1077 79.32 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|csv:101228923 7 414 + 408 Gaps:7 39.14 1050 79.32 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|csv:101207104 7 414 + 408 Gaps:7 38.27 1074 79.32 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|tcc:TCM_037551 7 430 + 424 Gaps:8 39.12 1094 76.17 0.0 Binding isoform 1
blastp_uniprot_sprot sp|Q6PD62|CTR9_HUMAN 7 228 + 222 Gaps:14 18.93 1173 41.44 1e-41 RNA polymerase-associated protein CTR9 homolog OS Homo sapiens GN CTR9 PE 1 SV 1
blastp_uniprot_sprot sp|Q62018|CTR9_MOUSE 7 228 + 222 Gaps:14 18.93 1173 40.99 2e-41 RNA polymerase-associated protein CTR9 homolog OS Mus musculus GN Ctr9 PE 1 SV 2
blastp_uniprot_sprot sp|Q4QR29|CTR9_XENLA 7 306 + 300 Gaps:43 23.94 1157 39.35 1e-40 RNA polymerase-associated protein CTR9 homolog OS Xenopus laevis GN ctr9 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DEU9|CTR9_XENTR 7 252 + 246 Gaps:18 21.16 1172 38.31 3e-39 RNA polymerase-associated protein CTR9 homolog OS Xenopus tropicalis GN ctr9 PE 2 SV 1
blastp_uniprot_sprot sp|Q03560|YKD1_CAEEL 12 170 + 159 Gaps:5 13.39 1150 35.71 1e-21 TPR repeat-containing protein B0464.2 OS Caenorhabditis elegans GN B0464.2 PE 4 SV 3
rpsblast_kog gnl|CDD|37213 7 390 + 384 Gaps:23 37.03 1018 34.75 7e-75 KOG2002 KOG2002 KOG2002 TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism].
rpsblast_kog gnl|CDD|36359 182 430 + 249 Gaps:18 24.72 1064 20.53 4e-07 KOG1144 KOG1144 KOG1144 Translation initiation factor 5B (eIF-5B) [Translation ribosomal structure and biogenesis].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 9 136 128 SSF48452 none none none
PANTHER 7 430 424 PTHR14027 none none none
ProSiteProfiles 1 123 123 PS50293 none TPR repeat region circular profile. IPR013026
Pfam 54 121 68 PF13414 none TPR repeat none
Gene3D 4 68 65 G3DSA:1.25.40.10 none none IPR011990
SMART 54 87 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 90 123 34 SM00028 none Tetratricopeptide repeats IPR019734
Coils 142 163 22 Coil none none none
Coils 216 264 49 Coil none none none
ProSiteProfiles 90 123 34 PS50005 none TPR repeat profile. IPR019734
Gene3D 69 136 68 G3DSA:1.25.40.10 none none IPR011990
PANTHER 7 430 424 PTHR14027:SF2 none none IPR031101
ProSiteProfiles 54 87 34 PS50005 none TPR repeat profile. IPR019734

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting