Protein : Qrob_P0189860.2 Q. robur
Protein Identifier  ? Qrob_P0189860.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K15176 - RNA polymerase-associated protein CTR9 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 665  
Kegg Orthology  K15176
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0016570 histone modification The covalent alteration of one or more amino acid residues within a histone protein.
GO:0016593 Cdc73/Paf1 complex A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100794371 1 664 + 664 Gaps:4 61.16 1089 87.24 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|cic:CICLE_v10007295mg 1 664 + 664 Gaps:3 61.31 1088 87.26 0.0 hypothetical protein
blastp_kegg lcl|cit:102612227 1 664 + 664 Gaps:3 61.31 1088 87.11 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|cam:101491640 1 664 + 664 Gaps:4 61.67 1080 87.24 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|gmx:100804954 1 664 + 664 Gaps:4 61.21 1088 86.49 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|vvi:100252478 1 664 + 664 Gaps:3 61.14 1091 86.66 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|pmum:103340571 1 664 + 664 Gaps:3 61.14 1091 86.21 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_kegg lcl|tcc:TCM_037551 1 664 + 664 Gaps:3 60.97 1094 86.81 0.0 Binding isoform 1
blastp_kegg lcl|pvu:PHAVU_009G228100g 1 664 + 664 Gaps:4 61.55 1082 86.49 0.0 hypothetical protein
blastp_kegg lcl|csv:101207104 1 664 + 664 none 61.82 1074 86.60 0.0 RNA polymerase-associated protein CTR9 homolog
blastp_pdb 2hyz_A 96 472 + 377 Gaps:24 99.26 136 65.19 8e-13 mol:protein length:136 SYNTHETIC CONSENSUS TPR PROTEIN
blastp_pdb 2fo7_A 96 472 + 377 Gaps:24 99.26 136 65.19 8e-13 mol:protein length:136 SYNTHETIC CONSENSUS TPR PROTEIN
blastp_pdb 2wqh_A 271 435 + 165 Gaps:30 90.40 125 58.41 5e-12 mol:protein length:125 CTPR3Y3
blastp_pdb 1na0_B 87 435 + 349 Gaps:10 95.20 125 55.46 3e-11 mol:protein length:125 designed protein CTPR3
blastp_pdb 1na0_A 87 435 + 349 Gaps:10 95.20 125 55.46 3e-11 mol:protein length:125 designed protein CTPR3
blastp_pdb 3kd7_E 106 435 + 330 Gaps:11 95.20 125 60.50 4e-09 mol:protein length:125 CTPR390
blastp_pdb 3kd7_D 106 435 + 330 Gaps:11 95.20 125 60.50 4e-09 mol:protein length:125 CTPR390
blastp_pdb 3kd7_C 106 435 + 330 Gaps:11 95.20 125 60.50 4e-09 mol:protein length:125 CTPR390
blastp_pdb 3kd7_B 106 435 + 330 Gaps:11 95.20 125 60.50 4e-09 mol:protein length:125 CTPR390
blastp_pdb 3kd7_A 106 435 + 330 Gaps:11 95.20 125 60.50 4e-09 mol:protein length:125 CTPR390
blastp_uniprot_sprot sp|Q4QR29|CTR9_XENLA 2 664 + 663 Gaps:53 54.97 1157 37.26 7e-112 RNA polymerase-associated protein CTR9 homolog OS Xenopus laevis GN ctr9 PE 2 SV 1
blastp_uniprot_sprot sp|Q6PD62|CTR9_HUMAN 4 664 + 661 Gaps:53 54.05 1173 36.91 1e-110 RNA polymerase-associated protein CTR9 homolog OS Homo sapiens GN CTR9 PE 1 SV 1
blastp_uniprot_sprot sp|Q62018|CTR9_MOUSE 4 664 + 661 Gaps:53 54.05 1173 36.91 2e-110 RNA polymerase-associated protein CTR9 homolog OS Mus musculus GN Ctr9 PE 1 SV 2
blastp_uniprot_sprot sp|Q6DEU9|CTR9_XENTR 4 664 + 661 Gaps:53 54.10 1172 36.91 2e-109 RNA polymerase-associated protein CTR9 homolog OS Xenopus tropicalis GN ctr9 PE 2 SV 1
blastp_uniprot_sprot sp|Q03560|YKD1_CAEEL 4 663 + 660 Gaps:56 57.04 1150 29.42 5e-68 TPR repeat-containing protein B0464.2 OS Caenorhabditis elegans GN B0464.2 PE 4 SV 3
blastp_uniprot_sprot sp|O42668|TPR1_SCHPO 4 580 + 577 Gaps:78 53.80 1039 28.80 4e-38 Tetratricopeptide repeat protein 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN tpr1 PE 1 SV 1
blastp_uniprot_sprot sp|P89105|CTR9_YEAST 6 663 + 658 Gaps:136 61.47 1077 24.92 6e-21 RNA polymerase-associated protein CTR9 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN CTR9 PE 1 SV 3
blastp_uniprot_sprot sp|P10505|APC3_SCHPO 165 418 + 254 Gaps:13 37.14 665 23.48 1e-09 Anaphase-promoting complex subunit 3 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN nuc2 PE 1 SV 3
blastp_uniprot_sprot sp|O18158|OGT1_CAEEL 243 635 + 393 Gaps:49 35.97 1151 23.43 5e-09 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase OS Caenorhabditis elegans GN ogt-1 PE 1 SV 2
blastp_uniprot_sprot sp|P81436|OGT1_RABIT 89 614 + 526 Gaps:146 46.08 1046 43.57 1e-07 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS Oryctolagus cuniculus GN OGT PE 1 SV 2

39 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 197 227 31 PS50005 none TPR repeat profile. IPR019734
ProSiteProfiles 590 623 34 PS50005 none TPR repeat profile. IPR019734
Pfam 372 435 64 PF13414 none TPR repeat none
Pfam 301 370 70 PF13414 none TPR repeat none
Pfam 165 220 56 PF13414 none TPR repeat none
ProSiteProfiles 302 335 34 PS50005 none TPR repeat profile. IPR019734
PANTHER 521 664 144 PTHR14027 none none none
SMART 302 335 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 590 623 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 162 195 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 373 406 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 445 474 30 SM00028 none Tetratricopeptide repeats IPR019734
SMART 556 589 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 522 555 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 128 161 34 SM00028 none Tetratricopeptide repeats IPR019734
SMART 197 227 31 SM00028 none Tetratricopeptide repeats IPR019734
SMART 339 372 34 SM00028 none Tetratricopeptide repeats IPR019734
ProSiteProfiles 162 195 34 PS50005 none TPR repeat profile. IPR019734
ProSiteProfiles 373 406 34 PS50005 none TPR repeat profile. IPR019734
Gene3D 314 459 146 G3DSA:1.25.40.10 none none IPR011990
Gene3D 142 229 88 G3DSA:1.25.40.10 none none IPR011990
Pfam 446 472 27 PF00515 none Tetratricopeptide repeat IPR001440
SUPERFAMILY 250 475 226 SSF48452 none none none
SUPERFAMILY 525 614 90 SSF48452 none none none
SUPERFAMILY 106 230 125 SSF48452 none none none
SUPERFAMILY 285 327 43 SSF48452 none none none
PANTHER 521 664 144 PTHR14027:SF2 none none IPR031101
ProSiteProfiles 113 623 511 PS50293 none TPR repeat region circular profile. IPR013026
PANTHER 4 493 490 PTHR14027:SF2 none none IPR031101
Gene3D 518 616 99 G3DSA:1.25.40.10 none none IPR011990

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting