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Download

Genomic sequences

  • bt4_supctg.fsa.gz (11.34 MB) Botrytis T4 Supercontigs
  • bt4_ctg.fsa.gz (11.29 MB) Botrytis T4 contigs (virtual contigs extracted from supercontigs after final assembly they are separated by gap of at least one nucleotide N)
  • bt4_ctg_exclus.fsa.gz (667.17 kB) Botrytis T4 excluded contigs (from excluded supercontigs (length < 20Kb or Ns > 10%)

Genes

  • BofuT4_orfnucall_1.fsa.gz (5.32 MB) Botrytis T4 predicted genes:
    It contains reliable and unreliable Eugene predicted gene (without UTRs)
    BofuT4_Pxxxxxx.1 : gene with length > 300 Nucl OR (gene with length < 300 aa with EST Evidence)
    BofuT4_uPxxxxxx.1 : gene with length < 300 aa without EST evidence (at the time of prediction pipeline))
  • BofuT4_orfprotall_1.fsa.gz (3.45 MB) Botrytis T4 predicted protein:
    It contains reliable and unreliable Eugene predicted protein
    BofuT4_Pxxxxxx.1 : protein with length > 100 aa OR (protein with length < 100 aa with EST Evidence)
    BofuT4_uPxxxxxx.1 : protein with length < 100 aa without EST evidence (at the time of prediction pipeline))
  • Bot_chips.fsa.gz (6.00 MB) Botrytis T4 (genes and ESTs) and B05.10 (genes) sequences used for Botrytis Nimblegen design

EST (public only)


Botrytis ESTs Libraries Nb seqs Description
T4 AL* 6412 Mycelium, nitrate starvation
PD0ABA* 18701 Young mycelium
PD0ACA* 7284 pH stress
PD0AEA* 2984 Appressoria on teflon
PD0AGA* 6584 Mycelium - different stresses library
PD0AHA* 6846 Appressoria on teflon
PD0ADA* 4094 Carbon sources
A1 BcA1* 10532 Mycelium, 4 days in rich medium
SAS56 X SAS405 PD0AFA* 3450 Mycelium, 4 days in rich medium
Total ESTs Bot_allest4_public 66887 ESTs
Total EST contigs Bot_allest4_clctg_public 8954 unisequences mapped on the genome

 

Supplementary downloads

Communications




Update: 27 Jan 2012
Creation date: 24 Jun 2010