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Forest trees

Forest trees

As part of the Forest tree GnpIS project, several forest trees species and their associated data can be found in GnpIS .

These data are provided by different sources (projects and networks) listed on this page .

 

Data overview

Data for Abies, Betula, Castanea, Fagus, Fraxinus, Picea, Pinus, Populus, Quercus, Salix, Sorbus, Taxus and Ulmus species are available in GnpIS.

Their access is free Public access or restricted Registered access .

 

Genome sequencing and annotation overview

  Blast Genome Browser Intermine
717-1B4 draft genome sequence Public access    
Populus trichocarpa V1   Public access Registered access  
Populus trichocarpa V2   Public access  
Populus trichocarpa V3   Public access  
Quercus robur genome assembly PM1N (Haploid version: 12 pseudo molecules with 871 scaffolds + 538 unassigned scaffolds) Public access
Quercus robur genome assembly V2_2N (Diploid version 2, 8827 scaffolds) Public access  
Quercus robur genome assembly V1_2N (Diploid version 1, 17910 scaffolds, Plomion et al, 2015) Public access

Genetic and genomic data overview on 26/09/2018

  #Total #Public #Private
Genetic Resources
Public access Registered access
Taxon 188 188 0
Accession 31393 16454 14939
Phenotyping
Public access Registered access
Trial 238 53 185
Lot 9478 2684 6794
Variable 242 165 80
Observation 2418056 770700 1647356
Genotyping
Public access
Experiment 5 5 0
Lot 384 384 0
Marker 13756 13756 0
Sequence
Public access
Experiment 1 1 0
Sequence 82 82 0
Analysis 0 0 0
Polymorphism
Public access Registered access
Analysis 10 9 1
Sequence Variation 588438 416567 171871
Polymorphic loci 165 165 0
SNP marker 165 165 0
Genetic Map
Public access Registered access
Map 33 29 4
Marker 7587 7088 505
QTL 1022 723 299
Update: 27 Sep 2018
Creation date: 19 Aug 2014