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Genome sequences and databases

Access restricted to FungIsochores project consortium

  • The annotation of the last assembly of V. inaequalis (2444 Scafolds, 9116 contigs, version 4, 454x + solexa sequencing),  is released since October 2010
  • Download V. inaequalis genome sequences (supercontigs, contigs, genes ...)
  • Genome Report System  : A report system to gather all information available (structural & functional) related to 10,426 genes (complete) predicted by Eugene
  • GBrowse : a Genome Browser for V. inaequalis v4 Structural annotation : A database based on the chado model (GMOD) gathers all the information produced the structural annotation pipeline of V. inaequalis genome.
    • Pediction pipeline has been processed through ab initio gene finding softwares and similarity methods. All results have been then gathered and processed by  Eugene  to predict 14,298 gene models (from which 3872 are partial prediction)> 100 bases. The gene models were separated into two subsets: one main set comprising 11,865 genes with coding sequence > 300 bases, or < 300 bases but with at least one EST evidence ; and a second subset of 2433 dubious genes with a coding sequence smaller than 300 bases and without any EST. 
    • Protein mapping from Swissprot
    • ESTs from V. inaequalis libraries and apple infected by V. inaequalis
    • Ascomycetes ESTs
    • Genomes of L. maculans, M.graminicola, S. nodorum
    • Transposable Elements copies from Consensus families (REPET TEdenovo and TEannot)
Update: 23 Nov 2015
Creation date: 14 Oct 2010