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Forest trees

Forest trees

As part of the Forest tree GnpIS project, several forest trees species and their associated data can be found in GnpIS .

These data are provided by different sources (projects and networks) listed on this page .

 

Data overview

Data for Abies, Acacia, Acer, Alnus, Betula, Calocedrus, Carpinus, Castanea, Cedrus, Cryptomeria, Cupressus, Eucalyptus, Fagus, Fraxinus, Juglans, Larix, Liriodendron, Nothofagus, Picea, Pinus, Platanus, Populus, Prunus, Pseudotsuga, Quercus, Robinia, Salix, Sorbus, Taxus, Thuja and Ulmus genus are available in GnpIS.

Their access is free Public access or restricted Registered access .

 

Genome sequencing and annotation overview

  Blast Genome Browser Intermine
717-1B4 draft genome sequence Public access    
Populus trichocarpa V1   Public access Registered access  
Populus trichocarpa V2   Public access  
Populus trichocarpa V3   Public access  
Quercus robur genome assembly PM1N (Haploid version: 12 pseudo molecules with 871 scaffolds + 538 unassigned scaffolds) Public access
Quercus robur genome assembly V2_2N (Diploid version 2, 8827 scaffolds) Public access  
Quercus robur genome assembly V1_2N (Diploid version 1, 17910 scaffolds, Plomion et al, 2015) Public access

Genetic and genomic data overview on 18/06/2021

  #Total #Public #Private
Genetic Resources
Public access Registered access
Taxon 220 220 0
Accession 36381 25863 10518
Phenotyping
Public access Registered access
Trial 1337 1329 8
Lot 11090 8763 2327
Variable 456 433 33
Observation 4185984 2664940 1521044
Genotyping
Public access Registered access
Experiment 11 10 1
Lot 9056 912 8144
Validated Marker 13838 13838 0
SNP discovery 10201 8665 1536
Sequence
Public access
Experiment 1 1 0
Sequence 82 82 0
Analysis 0 0 0
Genetic Map
Public access Registered access
Map 33 29 4
Marker 7587 7088 505
QTL 1022 723 299
Synteny
Public access
Synteny 2 2 0
Update: 18 Jun 2021
Creation date: 19 Aug 2014