Protein : Qrob_P0539060.2 Q. robur
Protein Identifier  ? Qrob_P0539060.2 Organism . Name  Quercus robur
Score  31.1 Score Type  egn
Protein Description  (M=1) PF00939//PF00999//PF03141 - Sodium:sulfate symporter transmembrane region // Sodium/hydrogen exchanger family // Putative S-adenosyl-L-methionine-dependent methyltransferase Code Enzyme  EC:2.7.12.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 716  
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0 Synonyms

12 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006814 sodium ion transport The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0006812 cation transport The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0015299 solute:proton antiporter activity Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out).
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO:0008168 methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
GO:0005774 vacuolar membrane The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell.
GO:0005886 plasma membrane The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO:0009651 response to salt stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
GO:0055075 potassium ion homeostasis Any process involved in the maintenance of an internal steady state of potassium ions within an organism or cell.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s35480g 595 715 + 121 Gaps:2 33.90 351 69.75 4e-45 POPTRDRAFT_797873 kinase family protein
blastp_kegg lcl|vvi:100254246 595 715 + 121 Gaps:2 33.81 352 67.23 9e-45 serine/threonine-protein kinase HT1-like
blastp_kegg lcl|pop:POPTR_0017s10510g 595 715 + 121 Gaps:2 33.90 351 68.07 2e-44 POPTRDRAFT_825505 hypothetical protein
blastp_kegg lcl|vvi:100243394 595 715 + 121 Gaps:2 33.81 352 64.71 5e-43 serine/threonine-protein kinase HT1-like
blastp_kegg lcl|pda:103695769 595 715 + 121 Gaps:2 33.81 352 60.50 4e-42 serine/threonine-protein kinase HT1-like
blastp_kegg lcl|rcu:RCOM_1064720 595 715 + 121 Gaps:3 33.99 353 64.17 3e-41 protein kinase atn1 putative (EC:2.7.11.25)
blastp_kegg lcl|sot:102581793 595 715 + 121 Gaps:2 33.71 353 63.03 3e-41 serine/threonine-protein kinase HT1-like
blastp_kegg lcl|dosa:Os02t0594100-01 595 715 + 121 Gaps:2 33.81 352 60.50 5e-41 Os02g0594100 Similar to Protein kinase ATN1.
blastp_kegg lcl|osa:4329848 595 715 + 121 Gaps:2 33.81 352 60.50 5e-41 Os02g0594100
blastp_kegg lcl|tcc:TCM_012228 595 715 + 121 Gaps:2 33.81 352 62.18 2e-40 Kinase superfamily protein
blastp_uniprot_sprot sp|Q84WG1|NHX3_ARATH 383 496 + 114 Gaps:3 22.07 503 62.16 2e-30 Sodium/hydrogen exchanger 3 OS Arabidopsis thaliana GN NHX3 PE 2 SV 2
blastp_uniprot_sprot sp|Q56XP4|NHX2_ARATH 382 469 + 88 none 16.12 546 67.05 3e-29 Sodium/hydrogen exchanger 2 OS Arabidopsis thaliana GN NHX2 PE 2 SV 2
blastp_uniprot_sprot sp|Q8S397|NHX4_ARATH 368 470 + 103 Gaps:3 18.90 529 60.00 5e-26 Sodium/hydrogen exchanger 4 OS Arabidopsis thaliana GN NHX4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FMF7|DIT21_ARATH 327 420 + 94 Gaps:3 16.87 563 56.84 5e-22 Dicarboxylate transporter 2.1 chloroplastic OS Arabidopsis thaliana GN DIT2-1 PE 1 SV 1
blastp_uniprot_sprot sp|Q68KI4|NHX1_ARATH 383 451 + 69 none 12.83 538 69.57 1e-21 Sodium/hydrogen exchanger 1 OS Arabidopsis thaliana GN NHX1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8L7Z9|DIT2_SPIOL 328 384 + 57 none 10.11 564 73.68 3e-19 Dicarboxylate transporter 2 chloroplastic OS Spinacia oleracea GN DIT2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C9Q8|PMTT_ARATH 180 250 + 71 Gaps:7 10.23 684 64.29 3e-18 Probable pectin methyltransferase QUA2 OS Arabidopsis thaliana GN QUA2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FG39|PMTC_ARATH 201 262 + 62 none 9.09 682 59.68 8e-16 Probable methyltransferase PMT12 OS Arabidopsis thaliana GN At5g06050 PE 2 SV 1
blastp_uniprot_sprot sp|Q3EC77|PMT5_ARATH 201 248 + 48 none 7.92 606 70.83 1e-14 Probable methyltransferase PMT5 OS Arabidopsis thaliana GN At2g03480 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FMF8|DIT22_ARATH 327 405 + 79 Gaps:19 17.85 549 44.90 3e-14 Dicarboxylate transporter 2.2 chloroplastic OS Arabidopsis thaliana GN DIT2-2 PE 2 SV 1
rpsblast_cdd gnl|CDD|190539 201 250 + 50 none 9.88 506 62.00 2e-20 pfam03141 Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase. This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase.
rpsblast_cdd gnl|CDD|109974 322 389 + 68 none 14.44 471 41.18 1e-14 pfam00939 Na_sulph_symp Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif and belong to the subfamily SODIT1.
rpsblast_cdd gnl|CDD|162037 327 465 + 139 Gaps:25 27.03 444 30.83 1e-10 TIGR00785 dass anion transporter. The Divalent Anion:Na+ Symporter (DASS) Family (TC 2.A.47) Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
rpsblast_cdd gnl|CDD|162063 385 465 + 81 Gaps:4 15.21 559 25.88 1e-08 TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria blue green bacteria yeast plants and animals.Transporters from eukaryotes have been functionally characterized and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation extruding the H+ generated during metabolism and (2) salt tolerance (in plants) due to Na+ uptake into vacuoles.This Hmm is specific for the eukaryotic members members of this family.
rpsblast_cdd gnl|CDD|201544 383 465 + 83 Gaps:3 22.70 370 29.76 5e-08 pfam00999 Na_H_Exchanger Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.
rpsblast_cdd gnl|CDD|30819 319 389 + 71 Gaps:1 15.62 461 36.11 2e-07 COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|30375 324 468 + 145 Gaps:31 27.51 429 32.20 4e-07 COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].
rpsblast_kog gnl|CDD|37176 384 472 + 89 Gaps:1 15.65 575 45.56 1e-25 KOG1965 KOG1965 KOG1965 Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism].

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 352 379 28 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 383 475 93 PF00999 none Sodium/hydrogen exchanger family IPR006153
Phobius 328 351 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 432 450 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 327 327 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 320 388 69 PF00939 "Reactome:REACT_15518","Reactome:REACT_20633" Sodium:sulfate symporter transmembrane region IPR001898
Pfam 201 251 51 PF03141 none Putative S-adenosyl-L-methionine-dependent methyltransferase IPR004159
Phobius 402 407 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 473 715 243 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 383 465 83 PTHR10110 "Reactome:REACT_15518";signature_desc=SODIUM/HYDROGEN EXCHANGER none IPR018422
PANTHER 383 465 83 PTHR10110:SF101 none none IPR029872
Phobius 451 472 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 572 650 79 G3DSA:1.10.510.10 none none none
Phobius 408 431 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 380 401 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 613 676 64 SSF56112 none none IPR011009

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting