Protein : Qrob_P0533480.2 Q. robur
Protein Identifier  ? Qrob_P0533480.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG1081//KOG1862//KOG1946//KOG2402 - Transcription factor NSD1 and related SET domain proteins [Transcription]. // GYF domain containing proteins [General function prediction only]. // RNA polymerase I transcription factor UAF [Transcription]. // Paf1/RNA polymerase II complex RTF1 component (involved in regulation of TATA box-binding protein) [Transcription]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1525  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO:0016570 histone modification The covalent alteration of one or more amino acid residues within a histone protein.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103340177 47 1524 + 1478 Gaps:119 97.26 1459 62.58 0.0 zinc finger CCCH domain-containing protein 44
blastp_kegg lcl|pper:PRUPE_ppa000244mg 31 1524 + 1494 Gaps:171 98.09 1412 62.96 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0172980 21 1524 + 1504 Gaps:192 98.87 1586 54.85 0.0 nuclear receptor binding set domain containing protein 1 nsd putative
blastp_kegg lcl|pxb:103966731 120 1524 + 1405 Gaps:149 94.80 1443 59.50 0.0 zinc finger CCCH domain-containing protein 19-like
blastp_kegg lcl|pop:POPTR_0007s13760g 21 1524 + 1504 Gaps:166 99.56 1605 51.81 0.0 POPTRDRAFT_219537 hypothetical protein
blastp_kegg lcl|pxb:103930980 124 1524 + 1401 Gaps:155 97.50 1399 59.60 0.0 zinc finger CCCH domain-containing protein 44-like
blastp_kegg lcl|mdm:103407085 120 1524 + 1405 Gaps:163 94.73 1423 58.53 0.0 zinc finger CCCH domain-containing protein 44-like
blastp_kegg lcl|fve:101306667 33 1524 + 1492 Gaps:205 99.31 1598 54.57 0.0 zinc finger CCCH domain-containing protein 44-like
blastp_kegg lcl|pvu:PHAVU_002G111600g 119 1524 + 1406 Gaps:165 96.09 1431 52.58 0.0 hypothetical protein
blastp_kegg lcl|gmx:100810823 92 1524 + 1433 Gaps:137 98.68 1368 53.26 0.0 zinc finger CCCH domain-containing protein 44-like
blastp_pdb 1v32_A 369 449 + 81 Gaps:2 78.22 101 37.97 5e-10 mol:protein length:101 hypothetical protein RAFL09-47-K03
blastp_pdb 1wh2_A 838 886 + 49 Gaps:2 65.38 78 49.02 6e-09 mol:protein length:78 Hypothetical protein At5g08430
blastp_pdb 2db9_A 512 635 + 124 Gaps:6 81.88 149 29.51 3e-08 mol:protein length:149 Paf1/RNA polymerase II complex component
blastp_pdb 2bze_A 512 635 + 124 Gaps:6 79.74 153 29.51 4e-08 mol:protein length:153 KIAA0252 PROTEIN
blastp_pdb 3u1u_B 512 635 + 124 Gaps:6 89.05 137 29.51 1e-07 mol:protein length:137 RNA polymerase-associated protein RTF1 homolo
blastp_pdb 3u1u_A 512 635 + 124 Gaps:6 89.05 137 29.51 1e-07 mol:protein length:137 RNA polymerase-associated protein RTF1 homolo
blastp_uniprot_sprot sp|Q9SIV5|C3H19_ARATH 121 1523 + 1403 Gaps:109 50.54 1773 52.01 0.0 Zinc finger CCCH domain-containing protein 19 OS Arabidopsis thaliana GN NERD PE 1 SV 3
blastp_uniprot_sprot sp|Q9SD34|C3H44_ARATH 44 1524 + 1481 Gaps:55 57.51 1292 58.82 0.0 Zinc finger CCCH domain-containing protein 44 OS Arabidopsis thaliana GN At3g51120 PE 2 SV 3
blastp_uniprot_sprot sp|Q9FT92|Y5843_ARATH 369 886 + 518 Gaps:83 93.85 553 32.56 3e-47 Uncharacterized protein At5g08430 OS Arabidopsis thaliana GN At5g08430 PE 1 SV 2
blastp_uniprot_sprot sp|Q9BZ95|NSD3_HUMAN 132 218 + 87 Gaps:6 5.64 1437 45.68 4e-13 Histone-lysine N-methyltransferase NSD3 OS Homo sapiens GN WHSC1L1 PE 1 SV 1
blastp_uniprot_sprot sp|O96028|NSD2_HUMAN 145 236 + 92 Gaps:3 6.52 1365 42.70 1e-12 Histone-lysine N-methyltransferase NSD2 OS Homo sapiens GN WHSC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8BVE8|NSD2_MOUSE 145 218 + 74 Gaps:3 5.20 1365 50.70 1e-12 Histone-lysine N-methyltransferase NSD2 OS Mus musculus GN Whsc1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6P2L6|NSD3_MOUSE 145 219 + 75 Gaps:3 5.00 1439 45.83 5e-12 Histone-lysine N-methyltransferase NSD3 OS Mus musculus GN Whsc1l1 PE 1 SV 2
blastp_uniprot_sprot sp|O88491|NSD1_MOUSE 146 218 + 73 Gaps:3 2.70 2588 45.71 7e-12 Histone-lysine N-methyltransferase H3 lysine-36 and H4 lysine-20 specific OS Mus musculus GN Nsd1 PE 1 SV 1
blastp_uniprot_sprot sp|Q96L73|NSD1_HUMAN 146 218 + 73 Gaps:3 2.60 2696 45.71 1e-11 Histone-lysine N-methyltransferase H3 lysine-36 and H4 lysine-20 specific OS Homo sapiens GN NSD1 PE 1 SV 1
blastp_uniprot_sprot sp|Q0DVU4|C3H20_ORYSJ 1418 1524 + 107 Gaps:16 13.72 707 42.27 1e-08 Zinc finger CCCH domain-containing protein 20 OS Oryza sativa subsp. japonica GN Os03g0112700 PE 2 SV 1
rpsblast_cdd gnl|CDD|197843 506 615 + 110 Gaps:1 100.00 109 50.46 1e-33 smart00719 Plus3 Short conserved domain in transcriptional regulators. Plus3 domains occur in the Saccharomyces cerevisiae Rtf1p protein which interacts with Spt6p and in parsley CIP which interacts with the bZIP protein CPRF1.
rpsblast_cdd gnl|CDD|190531 510 614 + 105 Gaps:2 100.00 105 35.24 9e-26 pfam03126 Plus-3 Plus-3 domain. This domain is about 90 residues in length and is often found associated with the pfam02213 domain. The function of this domain is uncertain. It is possible that this domain is involved in DNA binding as it has three conserved positively charged residues hence this domain has been named the plus-3 domain. It is found in yeast Rtf1 which may be a transcription elongation factor.
rpsblast_cdd gnl|CDD|145386 371 445 + 75 Gaps:6 90.79 76 43.48 3e-16 pfam02201 SWIB SWIB/MDM2 domain. This family includes the SWIB domain and the MDM2 domain. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2.
rpsblast_cdd gnl|CDD|197728 836 889 + 54 Gaps:2 100.00 56 35.71 2e-09 smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 507 636 130 SSF159042 none none none
ProSitePatterns 152 212 61 PS01359 none Zinc finger PHD-type signature. IPR019786
Pfam 511 615 105 PF03126 none Plus-3 domain IPR004343
ProSiteProfiles 835 887 53 PS50829 none GYF domain profile. IPR003169
SMART 506 616 111 SM00719 none Short conserved domain in transcriptional regulators. IPR018144
PANTHER 135 191 57 PTHR22884 none none none
PANTHER 255 427 173 PTHR22884 none none none
Gene3D 145 204 60 G3DSA:3.30.40.10 none none IPR013083
ProSiteProfiles 1499 1524 26 PS50103 none Zinc finger C3H1-type profile. IPR000571
SUPERFAMILY 825 887 63 SSF55277 none none IPR003169
SMART 371 449 79 SM00151 none SWI complex, BAF60b domains IPR019835
ProSiteProfiles 149 215 67 PS50016 none Zinc finger PHD-type profile. IPR019787
Gene3D 837 887 51 G3DSA:3.30.1490.40 none none IPR003169
Pfam 836 885 50 PF02213 none GYF domain IPR003169
SMART 151 197 47 SM00249 none PHD zinc finger IPR001965
SUPERFAMILY 121 196 76 SSF57903 none none IPR011011
ProSiteProfiles 506 639 134 PS51360 none Plus3 domain profile. IPR004343
SUPERFAMILY 1499 1523 25 SSF90229 none none none
SMART 836 889 54 SM00444 none Contains conserved Gly-Tyr-Phe residues IPR003169
PANTHER 135 191 57 PTHR22884:SF237 none none none
PANTHER 255 427 173 PTHR22884:SF237 none none none
Pfam 376 445 70 PF02201 none SWIB/MDM2 domain IPR003121
SUPERFAMILY 368 445 78 SSF47592 none none IPR003121
Gene3D 367 450 84 G3DSA:1.10.245.10 none none IPR003121

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting