Protein : Qrob_P0507990.2 Q. robur

Protein Identifier  ? Qrob_P0507990.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) 1.17.1.4 - Xanthine dehydrogenase. Alias (in v1)  Qrob_P0247080.1
Code Enzyme  EC:1.17.1.4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1285  
Kegg Orthology  K00106

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0 Synonyms

10 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity Catalysis of the reaction: UDP-N-acetylmuramate + NADP+ = UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine + NADPH + H+.
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO:0051536 iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
GO:0051537 2 iron, 2 sulfur cluster binding Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102622737 1 1284 + 1284 Gaps:19 95.11 1370 82.81 0.0 xanthine dehydrogenase 1-like
blastp_kegg lcl|tcc:TCM_040658 1 1284 + 1284 Gaps:20 95.18 1368 82.10 0.0 Xanthine dehydrogenase 1 isoform 1
blastp_kegg lcl|rcu:RCOM_1577610 1 1284 + 1284 Gaps:19 95.39 1366 81.81 0.0 xanthine dehydrogenase putative (EC:1.17.3.2)
blastp_kegg lcl|fve:101298861 1 1284 + 1284 Gaps:20 95.52 1363 81.87 0.0 xanthine dehydrogenase 1-like
blastp_kegg lcl|vvi:100248547 1 1284 + 1284 Gaps:19 95.18 1369 81.12 0.0 xanthine dehydrogenase/oxidase-like
blastp_kegg lcl|pmum:103326686 1 1284 + 1284 Gaps:21 95.18 1369 82.58 0.0 xanthine dehydrogenase 1-like
blastp_kegg lcl|pper:PRUPE_ppa000271mg 1 1284 + 1284 Gaps:21 95.18 1369 82.27 0.0 hypothetical protein
blastp_kegg lcl|mtr:MTR_2g098030 1 1284 + 1284 Gaps:25 95.36 1358 81.70 0.0 Xanthine dehydrogenase/oxidase
blastp_kegg lcl|cam:101495267 1 1284 + 1284 Gaps:28 95.14 1358 81.89 0.0 xanthine dehydrogenase 1-like
blastp_kegg lcl|mdm:103434098 1 1284 + 1284 Gaps:21 94.00 1384 81.40 0.0 xanthine dehydrogenase 1-like
blastp_pdb 1wyg_A 1 1271 + 1271 Gaps:72 94.74 1331 48.93 0.0 mol:protein length:1331 Xanthine dehydrogenase/oxidase
blastp_pdb 2ckj_D 1 1271 + 1271 Gaps:70 94.75 1333 48.46 0.0 mol:protein length:1333 XANTHINE OXIDOREDUCTASE
blastp_pdb 2ckj_C 1 1271 + 1271 Gaps:70 94.75 1333 48.46 0.0 mol:protein length:1333 XANTHINE OXIDOREDUCTASE
blastp_pdb 2ckj_B 1 1271 + 1271 Gaps:70 94.75 1333 48.46 0.0 mol:protein length:1333 XANTHINE OXIDOREDUCTASE
blastp_pdb 2ckj_A 1 1271 + 1271 Gaps:70 94.75 1333 48.46 0.0 mol:protein length:1333 XANTHINE OXIDOREDUCTASE
blastp_pdb 3an1_B 1 1271 + 1271 Gaps:72 94.74 1331 48.77 0.0 mol:protein length:1331 Xanthine dehydrogenase/oxidase
blastp_pdb 3an1_A 1 1271 + 1271 Gaps:72 94.74 1331 48.77 0.0 mol:protein length:1331 Xanthine dehydrogenase/oxidase
blastp_pdb 2e1q_D 1 1271 + 1271 Gaps:70 94.75 1333 48.38 0.0 mol:protein length:1333 Xanthine dehydrogenase/oxidase
blastp_pdb 2e1q_C 1 1271 + 1271 Gaps:70 94.75 1333 48.38 0.0 mol:protein length:1333 Xanthine dehydrogenase/oxidase
blastp_pdb 2e1q_B 1 1271 + 1271 Gaps:70 94.75 1333 48.38 0.0 mol:protein length:1333 Xanthine dehydrogenase/oxidase
blastp_uniprot_sprot sp|Q8GUQ8|XDH1_ARATH 1 1284 + 1284 Gaps:24 95.37 1361 76.19 0.0 Xanthine dehydrogenase 1 OS Arabidopsis thaliana GN XDH1 PE 1 SV 1
blastp_uniprot_sprot sp|F4JLI5|XDH2_ARATH 1 1284 + 1284 Gaps:26 95.93 1353 75.04 0.0 Xanthine dehydrogenase 2 OS Arabidopsis thaliana GN XDH2 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AUV1|XDH_ORYSJ 1 1284 + 1284 Gaps:21 95.03 1369 70.41 0.0 Xanthine dehydrogenase OS Oryza sativa subsp. japonica GN XDH PE 2 SV 1
blastp_uniprot_sprot sp|Q54FB7|XDH_DICDI 6 1273 + 1268 Gaps:85 94.33 1358 49.18 0.0 Xanthine dehydrogenase OS Dictyostelium discoideum GN xdh PE 3 SV 1
blastp_uniprot_sprot sp|P47990|XDH_CHICK 1 1270 + 1270 Gaps:63 94.48 1358 48.48 0.0 Xanthine dehydrogenase/oxidase OS Gallus gallus GN XDH PE 1 SV 1
blastp_uniprot_sprot sp|Q9MYW6|XDH_FELCA 1 1270 + 1270 Gaps:66 94.67 1331 48.57 0.0 Xanthine dehydrogenase/oxidase OS Felis catus GN XDH PE 2 SV 3
blastp_uniprot_sprot sp|P22985|XDH_RAT 1 1271 + 1271 Gaps:72 94.74 1331 48.85 0.0 Xanthine dehydrogenase/oxidase OS Rattus norvegicus GN Xdh PE 1 SV 3
blastp_uniprot_sprot sp|P47989|XDH_HUMAN 1 1271 + 1271 Gaps:70 94.75 1333 48.46 0.0 Xanthine dehydrogenase/oxidase OS Homo sapiens GN XDH PE 1 SV 4
blastp_uniprot_sprot sp|Q00519|XDH_MOUSE 1 1271 + 1271 Gaps:73 94.53 1335 48.26 0.0 Xanthine dehydrogenase/oxidase OS Mus musculus GN Xdh PE 1 SV 5
blastp_uniprot_sprot sp|P80457|XDH_BOVIN 1 1271 + 1271 Gaps:69 94.74 1332 47.54 0.0 Xanthine dehydrogenase/oxidase OS Bos taurus GN XDH PE 1 SV 4

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 18 98 81 G3DSA:3.10.20.30 none none IPR012675
Gene3D 99 211 113 G3DSA:1.10.150.120 none none IPR002888
Pfam 98 173 76 PF01799 none [2Fe-2S] binding domain IPR002888
SUPERFAMILY 18 102 85 SSF54292 none none IPR001041
PANTHER 11 177 167 PTHR11908:SF32 none none none
PANTHER 193 311 119 PTHR11908:SF32 none none none
Pfam 22 87 66 PF00111 none 2Fe-2S iron-sulfur cluster binding domain IPR001041
PANTHER 193 311 119 PTHR11908 none none none
ProSitePatterns 54 62 9 PS00197 none 2Fe-2S ferredoxin-type iron-sulfur binding region signature. IPR006058
Gene3D 265 310 46 G3DSA:3.30.43.10 none none IPR016167
PANTHER 11 177 167 PTHR11908 none none none
SUPERFAMILY 110 184 75 SSF47741 none none IPR002888
Pfam 267 310 44 PF00941 none FAD binding domain in molybdopterin dehydrogenase IPR002346
SUPERFAMILY 241 310 70 SSF56176 none none IPR016166
ProSiteProfiles 16 102 87 PS51085 none 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. IPR001041

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044

0 Targeting